miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16702 5' -47.2 NC_004156.1 + 81865 0.66 0.999986
Target:  5'- cCAACUCUGcAUCgUGCucaccaaacguuacaACGGuaccgugcgUCGAACCg -3'
miRNA:   3'- -GUUGAGACuUAG-ACG---------------UGCC---------AGUUUGG- -5'
16702 5' -47.2 NC_004156.1 + 146401 0.66 0.999984
Target:  5'- -cACUgUcGAGUCcaccacuaGCACGGUCAGAUCc -3'
miRNA:   3'- guUGAgA-CUUAGa-------CGUGCCAGUUUGG- -5'
16702 5' -47.2 NC_004156.1 + 97958 0.66 0.999984
Target:  5'- aGACUCgGAAUCUGaauCuGUCAcaucGACCa -3'
miRNA:   3'- gUUGAGaCUUAGACgu-GcCAGU----UUGG- -5'
16702 5' -47.2 NC_004156.1 + 203192 0.66 0.999978
Target:  5'- -cACUCUGAggaGUCUGCACca-CAAccACCa -3'
miRNA:   3'- guUGAGACU---UAGACGUGccaGUU--UGG- -5'
16702 5' -47.2 NC_004156.1 + 160041 0.66 0.999978
Target:  5'- -uACUCUGAAaccuacUCUGaaaacUACaGUCAAACCu -3'
miRNA:   3'- guUGAGACUU------AGAC-----GUGcCAGUUUGG- -5'
16702 5' -47.2 NC_004156.1 + 104426 0.67 0.999959
Target:  5'- ---aUC-GAGUCUGCAuCGGUgGGAUCa -3'
miRNA:   3'- guugAGaCUUAGACGU-GCCAgUUUGG- -5'
16702 5' -47.2 NC_004156.1 + 153225 0.67 0.999946
Target:  5'- uGACUC-GGAUgCUGCcCGGUUugcuAACCa -3'
miRNA:   3'- gUUGAGaCUUA-GACGuGCCAGu---UUGG- -5'
16702 5' -47.2 NC_004156.1 + 19299 0.67 0.999944
Target:  5'- gCAACgCUGGcggcaaaAUCUGCGCuGGUCAGuUCg -3'
miRNA:   3'- -GUUGaGACU-------UAGACGUG-CCAGUUuGG- -5'
16702 5' -47.2 NC_004156.1 + 9340 0.67 0.999906
Target:  5'- cCGAgUCUGAAUCUGgcuccgaauCugGGUCGggUUc -3'
miRNA:   3'- -GUUgAGACUUAGAC---------GugCCAGUuuGG- -5'
16702 5' -47.2 NC_004156.1 + 77308 0.68 0.999878
Target:  5'- gGGCaaUCUGggUCUGCugGGcUCGu--- -3'
miRNA:   3'- gUUG--AGACuuAGACGugCC-AGUuugg -5'
16702 5' -47.2 NC_004156.1 + 118988 0.68 0.999843
Target:  5'- --uUUUUGAAUCUGCGuauuaGGUC-AACCu -3'
miRNA:   3'- guuGAGACUUAGACGUg----CCAGuUUGG- -5'
16702 5' -47.2 NC_004156.1 + 96978 0.69 0.99942
Target:  5'- aCGAUUCgUGAAUCUGCaaaaguuuaacguguGCGGUau-GCCu -3'
miRNA:   3'- -GUUGAG-ACUUAGACG---------------UGCCAguuUGG- -5'
16702 5' -47.2 NC_004156.1 + 211426 0.69 0.999368
Target:  5'- ---gUCUGAGUCUGCGUGGUCuguuUCg -3'
miRNA:   3'- guugAGACUUAGACGUGCCAGuuu-GG- -5'
16702 5' -47.2 NC_004156.1 + 184067 0.7 0.998838
Target:  5'- cCAGCUCuUGAGaCUGUuuACGGUUAGcauuGCCg -3'
miRNA:   3'- -GUUGAG-ACUUaGACG--UGCCAGUU----UGG- -5'
16702 5' -47.2 NC_004156.1 + 172860 0.7 0.998303
Target:  5'- gGACUCUGA---UGCAcCGGUCGuaAACUg -3'
miRNA:   3'- gUUGAGACUuagACGU-GCCAGU--UUGG- -5'
16702 5' -47.2 NC_004156.1 + 42542 0.7 0.997967
Target:  5'- --cCUC-GAAUCUggGCACGGUCGGuguCCg -3'
miRNA:   3'- guuGAGaCUUAGA--CGUGCCAGUUu--GG- -5'
16702 5' -47.2 NC_004156.1 + 84868 0.72 0.994563
Target:  5'- aAACUCUaGAUCggGCACGGgCAAAUCc -3'
miRNA:   3'- gUUGAGAcUUAGa-CGUGCCaGUUUGG- -5'
16702 5' -47.2 NC_004156.1 + 87163 0.73 0.987562
Target:  5'- uCAACaUCUGAAUCUGUGaGGUCuGAAUCg -3'
miRNA:   3'- -GUUG-AGACUUAGACGUgCCAG-UUUGG- -5'
16702 5' -47.2 NC_004156.1 + 213935 1.13 0.017756
Target:  5'- gCAACUCUGAAUCUGCACGGUCAAACCu -3'
miRNA:   3'- -GUUGAGACUUAGACGUGCCAGUUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.