miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16703 5' -46.3 NC_004156.1 + 197870 0.66 0.999998
Target:  5'- --cGUGcgGCugGUGCGUgACCAaACAg -3'
miRNA:   3'- cauCGCuuUGugCAUGCA-UGGUaUGU- -5'
16703 5' -46.3 NC_004156.1 + 222024 0.66 0.999995
Target:  5'- -cAGUGGAACAgCGUGCGU-CCAcuuCAa -3'
miRNA:   3'- caUCGCUUUGU-GCAUGCAuGGUau-GU- -5'
16703 5' -46.3 NC_004156.1 + 84760 0.66 0.999993
Target:  5'- uUAGCGAuagcuuuagauugGACACGgcauccUGCGUACCAg--- -3'
miRNA:   3'- cAUCGCU-------------UUGUGC------AUGCAUGGUaugu -5'
16703 5' -46.3 NC_004156.1 + 76529 0.68 0.999955
Target:  5'- --uGUGggGCcggACGU-CGUACUAUACAg -3'
miRNA:   3'- cauCGCuuUG---UGCAuGCAUGGUAUGU- -5'
16703 5' -46.3 NC_004156.1 + 184763 0.68 0.999922
Target:  5'- ---aCGAAACAUGUACGcgACCAUGu- -3'
miRNA:   3'- caucGCUUUGUGCAUGCa-UGGUAUgu -5'
16703 5' -46.3 NC_004156.1 + 94338 0.69 0.999828
Target:  5'- cGUAGUGAuuGACA---AUGUACCGUACGa -3'
miRNA:   3'- -CAUCGCU--UUGUgcaUGCAUGGUAUGU- -5'
16703 5' -46.3 NC_004156.1 + 213527 0.71 0.998962
Target:  5'- -gGGCGu-GCACGaugUGCGUcugGCCGUACAg -3'
miRNA:   3'- caUCGCuuUGUGC---AUGCA---UGGUAUGU- -5'
16703 5' -46.3 NC_004156.1 + 97184 0.71 0.998471
Target:  5'- -aGGCcAAACACugGCGUACCGUACu -3'
miRNA:   3'- caUCGcUUUGUGcaUGCAUGGUAUGu -5'
16703 5' -46.3 NC_004156.1 + 106542 0.74 0.98827
Target:  5'- uGUAGCG-GACACGuUGCGgaauCCGUGCGu -3'
miRNA:   3'- -CAUCGCuUUGUGC-AUGCau--GGUAUGU- -5'
16703 5' -46.3 NC_004156.1 + 213895 0.76 0.970538
Target:  5'- --cGCcaGAGuACugGUGCGUACCGUGCAc -3'
miRNA:   3'- cauCG--CUU-UGugCAUGCAUGGUAUGU- -5'
16703 5' -46.3 NC_004156.1 + 154443 0.84 0.657863
Target:  5'- aGUGaCGAAACACGUACG-ACCAUACAc -3'
miRNA:   3'- -CAUcGCUUUGUGCAUGCaUGGUAUGU- -5'
16703 5' -46.3 NC_004156.1 + 226874 1.1 0.033371
Target:  5'- uGUAGCGAAACACGUACGUACCAUACAg -3'
miRNA:   3'- -CAUCGCUUUGUGCAUGCAUGGUAUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.