miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1671 3' -56.7 NC_001347.2 + 75036 0.66 0.938878
Target:  5'- cGGCGAuuguagguaacGaGCGGCAACgUGGCGaagCgACCg -3'
miRNA:   3'- aUCGCU-----------C-CGCCGUUG-ACCGCaa-G-UGG- -5'
1671 3' -56.7 NC_001347.2 + 62536 0.66 0.938878
Target:  5'- gAGCGuuGGCGGCGA-UGGUcauGUUCucCCa -3'
miRNA:   3'- aUCGCu-CCGCCGUUgACCG---CAAGu-GG- -5'
1671 3' -56.7 NC_001347.2 + 36712 0.66 0.938878
Target:  5'- aGGCccaguGGCGGCAGCaGGUGcaCGCUg -3'
miRNA:   3'- aUCGcu---CCGCCGUUGaCCGCaaGUGG- -5'
1671 3' -56.7 NC_001347.2 + 128780 0.66 0.938413
Target:  5'- cUAGCGAcGGCGGCcauggAGCUGcacucacGCGgccgUCACg -3'
miRNA:   3'- -AUCGCU-CCGCCG-----UUGAC-------CGCa---AGUGg -5'
1671 3' -56.7 NC_001347.2 + 210477 0.66 0.938413
Target:  5'- gAGCGAucccgaccaaagcGGCGGUcgguccaggucAAC-GGCGuUUCGCCg -3'
miRNA:   3'- aUCGCU-------------CCGCCG-----------UUGaCCGC-AAGUGG- -5'
1671 3' -56.7 NC_001347.2 + 196688 0.66 0.934124
Target:  5'- gAGCGGGGaCGuGCAGC-GGC--UCAUCa -3'
miRNA:   3'- aUCGCUCC-GC-CGUUGaCCGcaAGUGG- -5'
1671 3' -56.7 NC_001347.2 + 192047 0.66 0.933636
Target:  5'- cGGCGAcgacgguGGCGGCGACgacacGGCGacggUCAa- -3'
miRNA:   3'- aUCGCU-------CCGCCGUUGa----CCGCa---AGUgg -5'
1671 3' -56.7 NC_001347.2 + 13953 0.66 0.929143
Target:  5'- -cGCGGGGUGGCGAa--GCGggagCGCUg -3'
miRNA:   3'- auCGCUCCGCCGUUgacCGCaa--GUGG- -5'
1671 3' -56.7 NC_001347.2 + 184207 0.66 0.929143
Target:  5'- cGGCGcgaugccgcaGGGCGGUcGCUagcgugucgcaGCGUUCGCCg -3'
miRNA:   3'- aUCGC----------UCCGCCGuUGAc----------CGCAAGUGG- -5'
1671 3' -56.7 NC_001347.2 + 173659 0.66 0.923934
Target:  5'- gAG-GAGGUGGCGGCggUGGCGgcaagaagCACg -3'
miRNA:   3'- aUCgCUCCGCCGUUG--ACCGCaa------GUGg -5'
1671 3' -56.7 NC_001347.2 + 113117 0.66 0.923934
Target:  5'- aAGCGcAGGCGGCuguACaggagaUGGCgGUUCgACUg -3'
miRNA:   3'- aUCGC-UCCGCCGu--UG------ACCG-CAAG-UGG- -5'
1671 3' -56.7 NC_001347.2 + 76873 0.66 0.923934
Target:  5'- gAGCGAGuGCGGUugaggaucgcGCUgagguucugcgcGGCGaUCACCg -3'
miRNA:   3'- aUCGCUC-CGCCGu---------UGA------------CCGCaAGUGG- -5'
1671 3' -56.7 NC_001347.2 + 2004 0.66 0.922327
Target:  5'- cGGCGA-GCGGCAcggagacggaggccGCcGGCGgggacgCGCCg -3'
miRNA:   3'- aUCGCUcCGCCGU--------------UGaCCGCaa----GUGG- -5'
1671 3' -56.7 NC_001347.2 + 76617 0.66 0.918497
Target:  5'- -cGC-AGGCGGCGGCUgcggccgcGGCGgagGCCg -3'
miRNA:   3'- auCGcUCCGCCGUUGA--------CCGCaagUGG- -5'
1671 3' -56.7 NC_001347.2 + 184366 0.66 0.91794
Target:  5'- -cGUGAGGCGGCAcgcgugugcggggACgacgGGCGUU-GCg -3'
miRNA:   3'- auCGCUCCGCCGU-------------UGa---CCGCAAgUGg -5'
1671 3' -56.7 NC_001347.2 + 107322 0.67 0.912833
Target:  5'- --cCGAGGCGcCAGCcgacccagUGGCGuUUCGCCu -3'
miRNA:   3'- aucGCUCCGCcGUUG--------ACCGC-AAGUGG- -5'
1671 3' -56.7 NC_001347.2 + 59454 0.67 0.912833
Target:  5'- gAGUGAGGUGGauGCgGuGCGgugUCGCCu -3'
miRNA:   3'- aUCGCUCCGCCguUGaC-CGCa--AGUGG- -5'
1671 3' -56.7 NC_001347.2 + 65863 0.67 0.900828
Target:  5'- cAGCGGcuGGCcuucGGCAcGCUGGCGggccgacCGCCg -3'
miRNA:   3'- aUCGCU--CCG----CCGU-UGACCGCaa-----GUGG- -5'
1671 3' -56.7 NC_001347.2 + 22282 0.67 0.900828
Target:  5'- gGGCucGuGUGGCAGCUGGCuugUACCc -3'
miRNA:   3'- aUCGcuC-CGCCGUUGACCGcaaGUGG- -5'
1671 3' -56.7 NC_001347.2 + 5647 0.67 0.900828
Target:  5'- aAGCGGGGaccuguuGCu-CUGGCGcUUCGCCc -3'
miRNA:   3'- aUCGCUCCgc-----CGuuGACCGC-AAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.