miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1671 5' -56.6 NC_001347.2 + 95468 0.66 0.941182
Target:  5'- aUGGGCGCGCgucacgCGGC-GCCggugucggcggaUUGGUuCCg -3'
miRNA:   3'- -ACUCGCGCGa-----GUCGaUGG------------AACCGuGG- -5'
1671 5' -56.6 NC_001347.2 + 154106 0.66 0.941182
Target:  5'- -uAGCGUGCUCucGCUgaACCccccgcUGGUGCCa -3'
miRNA:   3'- acUCGCGCGAGu-CGA--UGGa-----ACCGUGG- -5'
1671 5' -56.6 NC_001347.2 + 89527 0.66 0.941182
Target:  5'- -aGGUGCGCgacgaGGCcgGCCaggcgGGCACCu -3'
miRNA:   3'- acUCGCGCGag---UCGa-UGGaa---CCGUGG- -5'
1671 5' -56.6 NC_001347.2 + 76885 0.66 0.941182
Target:  5'- uUGAGgauCGCGCUgagguucugcgCGGCgaucACCgUGGUACCg -3'
miRNA:   3'- -ACUC---GCGCGA-----------GUCGa---UGGaACCGUGG- -5'
1671 5' -56.6 NC_001347.2 + 2159 0.66 0.941182
Target:  5'- gGGGCGgaCGCggCAGCaGCagcGGCGCCg -3'
miRNA:   3'- aCUCGC--GCGa-GUCGaUGgaaCCGUGG- -5'
1671 5' -56.6 NC_001347.2 + 38014 0.66 0.936532
Target:  5'- --cGCGCGgcCUCGGCgGCg--GGCGCCg -3'
miRNA:   3'- acuCGCGC--GAGUCGaUGgaaCCGUGG- -5'
1671 5' -56.6 NC_001347.2 + 140403 0.66 0.936532
Target:  5'- cGGGUGCGCacccGCuUGCCcgUGGUGCCc -3'
miRNA:   3'- aCUCGCGCGagu-CG-AUGGa-ACCGUGG- -5'
1671 5' -56.6 NC_001347.2 + 85522 0.66 0.936532
Target:  5'- cGGGCGCGCgcgCuugAGCgugGCCcUGaagaGCGCCg -3'
miRNA:   3'- aCUCGCGCGa--G---UCGa--UGGaAC----CGUGG- -5'
1671 5' -56.6 NC_001347.2 + 77636 0.66 0.936532
Target:  5'- cGGGCGUGCUgGGCgGCCUccGCGa- -3'
miRNA:   3'- aCUCGCGCGAgUCGaUGGAacCGUgg -5'
1671 5' -56.6 NC_001347.2 + 39792 0.66 0.936532
Target:  5'- gGAGCGCa--CAGCcGCCUcccgGGCGCg -3'
miRNA:   3'- aCUCGCGcgaGUCGaUGGAa---CCGUGg -5'
1671 5' -56.6 NC_001347.2 + 153239 0.66 0.932152
Target:  5'- cGGGCGCGCgUCGGCcggcgacggcgguucGCCgUGGUuguugGCCg -3'
miRNA:   3'- aCUCGCGCG-AGUCGa--------------UGGaACCG-----UGG- -5'
1671 5' -56.6 NC_001347.2 + 93223 0.66 0.931654
Target:  5'- cGAGCuCGCUgAGCgGCagcggcGGCACCc -3'
miRNA:   3'- aCUCGcGCGAgUCGaUGgaa---CCGUGG- -5'
1671 5' -56.6 NC_001347.2 + 111979 0.66 0.931654
Target:  5'- uUGGGCGgGCUCugggaAGCUGCggcggCUUgGGCAgCa -3'
miRNA:   3'- -ACUCGCgCGAG-----UCGAUG-----GAA-CCGUgG- -5'
1671 5' -56.6 NC_001347.2 + 193170 0.66 0.931154
Target:  5'- cUGGGCacGCGCgUCGGCcGCgucgcaaacgcugCUUGGUACCc -3'
miRNA:   3'- -ACUCG--CGCG-AGUCGaUG-------------GAACCGUGG- -5'
1671 5' -56.6 NC_001347.2 + 141813 0.66 0.926548
Target:  5'- -aGGCGUGC-CGGCgcCCaUGGcCGCCa -3'
miRNA:   3'- acUCGCGCGaGUCGauGGaACC-GUGG- -5'
1671 5' -56.6 NC_001347.2 + 77932 0.66 0.926548
Target:  5'- -aGGUGCGCUCGGagcgGCUggaGGCGCa -3'
miRNA:   3'- acUCGCGCGAGUCga--UGGaa-CCGUGg -5'
1671 5' -56.6 NC_001347.2 + 92366 0.66 0.915648
Target:  5'- cGGGaCGCGg-CAGCaACCa-GGCGCCg -3'
miRNA:   3'- aCUC-GCGCgaGUCGaUGGaaCCGUGG- -5'
1671 5' -56.6 NC_001347.2 + 154439 0.67 0.909856
Target:  5'- cGGGUgGCGCcgaGGCUugUUguaaGGCACCg -3'
miRNA:   3'- aCUCG-CGCGag-UCGAugGAa---CCGUGG- -5'
1671 5' -56.6 NC_001347.2 + 21670 0.67 0.909856
Target:  5'- -uGGCGguagauCUCAGCUGCCUgGGgGCCu -3'
miRNA:   3'- acUCGCgc----GAGUCGAUGGAaCCgUGG- -5'
1671 5' -56.6 NC_001347.2 + 108169 0.67 0.909856
Target:  5'- aGGGCGCGCcgcUCAGUcGCCUa--CACCc -3'
miRNA:   3'- aCUCGCGCG---AGUCGaUGGAaccGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.