Results 1 - 4 of 4 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16711 | 5' | -47.3 | NC_004162.2 | + | 6004 | 0.66 | 0.742554 |
Target: 5'- -------gUCCAacCCCGAguCCGCAGUg -3' miRNA: 3'- ccuuuuuaAGGUaaGGGCU--GGCGUCG- -5' |
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16711 | 5' | -47.3 | NC_004162.2 | + | 7010 | 0.68 | 0.653617 |
Target: 5'- uGGAAGAucgUCUgacaaaaUCCgCGugCGCAGCc -3' miRNA: 3'- -CCUUUUua-AGGua-----AGG-GCugGCGUCG- -5' |
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16711 | 5' | -47.3 | NC_004162.2 | + | 9288 | 0.78 | 0.166336 |
Target: 5'- aGGAAAAAUUCaCA-UCCCGuuuCCGCuGGCa -3' miRNA: 3'- -CCUUUUUAAG-GUaAGGGCu--GGCG-UCG- -5' |
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16711 | 5' | -47.3 | NC_004162.2 | + | 8946 | 1.17 | 0.000287 |
Target: 5'- gGGAAAAAUUCCAUUCCCGACCGCAGCa -3' miRNA: 3'- -CCUUUUUAAGGUAAGGGCUGGCGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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