miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16716 5' -52.5 NC_004166.1 + 22197 0.66 0.828899
Target:  5'- cUCGCCCGcUGGuuUCgc--CGCCAGCg -3'
miRNA:   3'- -GGCGGGCcGCCuuAGaaauGUGGUUG- -5'
16716 5' -52.5 NC_004166.1 + 26334 0.66 0.819472
Target:  5'- gCGCCCGGacaaaaacggaCGGAaacguuaacuuaAUCa--GCACCGACg -3'
miRNA:   3'- gGCGGGCC-----------GCCU------------UAGaaaUGUGGUUG- -5'
16716 5' -52.5 NC_004166.1 + 23152 0.66 0.78998
Target:  5'- uCUGCCCGGCGuuGAAUUcaaauucgUUUGCGCUuuCc -3'
miRNA:   3'- -GGCGGGCCGC--CUUAG--------AAAUGUGGuuG- -5'
16716 5' -52.5 NC_004166.1 + 41492 0.67 0.769426
Target:  5'- -aGCuuGGCGGAGUUgu----CCAGCa -3'
miRNA:   3'- ggCGggCCGCCUUAGaaauguGGUUG- -5'
16716 5' -52.5 NC_004166.1 + 21118 0.68 0.726613
Target:  5'- uCCGCCCGGCGuGGcAUUg--AUAUgAACa -3'
miRNA:   3'- -GGCGGGCCGC-CU-UAGaaaUGUGgUUG- -5'
16716 5' -52.5 NC_004166.1 + 38290 0.69 0.636964
Target:  5'- aUCGCCCGGCuuGAAUCUcgGCuCCGu- -3'
miRNA:   3'- -GGCGGGCCGc-CUUAGAaaUGuGGUug -5'
16716 5' -52.5 NC_004166.1 + 33167 0.7 0.558008
Target:  5'- aCUGCCCGGUGGuugGGUCUuuucuaUUGCGuCUAACc -3'
miRNA:   3'- -GGCGGGCCGCC---UUAGA------AAUGU-GGUUG- -5'
16716 5' -52.5 NC_004166.1 + 24416 1.13 0.000866
Target:  5'- gCCGCCCGGCGGAAUCUUUACACCAACa -3'
miRNA:   3'- -GGCGGGCCGCCUUAGAAAUGUGGUUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.