miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1672 5' -56.9 NC_001347.2 + 160638 0.66 0.934932
Target:  5'- cUCAggcGCAGCACGguaccGCGGcCCG-GUCu -3'
miRNA:   3'- uAGU---CGUCGUGCaa---CGCCaGGCaCGG- -5'
1672 5' -56.9 NC_001347.2 + 155193 0.66 0.934932
Target:  5'- -aUAGCAGCucaGUUGUcaaGUCCGagUGCCa -3'
miRNA:   3'- uaGUCGUCGug-CAACGc--CAGGC--ACGG- -5'
1672 5' -56.9 NC_001347.2 + 104414 0.66 0.934932
Target:  5'- uUCGGCAGCAUGUccgaGCGcaaugCCGccGCCa -3'
miRNA:   3'- uAGUCGUCGUGCAa---CGCca---GGCa-CGG- -5'
1672 5' -56.9 NC_001347.2 + 68335 0.66 0.934932
Target:  5'- gGUgAGCAGCGCGcucucaUUG-GGUCCGcuggaGCCc -3'
miRNA:   3'- -UAgUCGUCGUGC------AACgCCAGGCa----CGG- -5'
1672 5' -56.9 NC_001347.2 + 159815 0.66 0.929993
Target:  5'- -cCAGCAGUgcuccagcgGCGUUuCGGUCCacGUGUCc -3'
miRNA:   3'- uaGUCGUCG---------UGCAAcGCCAGG--CACGG- -5'
1672 5' -56.9 NC_001347.2 + 187129 0.66 0.913809
Target:  5'- -aCAGCGGCGCGaUGUGGUa---GCCc -3'
miRNA:   3'- uaGUCGUCGUGCaACGCCAggcaCGG- -5'
1672 5' -56.9 NC_001347.2 + 39178 0.66 0.913809
Target:  5'- ---uGC-GCAUGgcGCGGcCCGUGCUg -3'
miRNA:   3'- uaguCGuCGUGCaaCGCCaGGCACGG- -5'
1672 5' -56.9 NC_001347.2 + 88330 0.66 0.913809
Target:  5'- -gCGGCAGCGCaagccGUGGUaaCCGUcGCCg -3'
miRNA:   3'- uaGUCGUCGUGcaa--CGCCA--GGCA-CGG- -5'
1672 5' -56.9 NC_001347.2 + 161158 0.66 0.907961
Target:  5'- cAUUAuCAGCGCGggGuCGGUCuCGUGUg -3'
miRNA:   3'- -UAGUcGUCGUGCaaC-GCCAG-GCACGg -5'
1672 5' -56.9 NC_001347.2 + 117891 0.67 0.901889
Target:  5'- cGUCAGaCGGgGCGgcgGCgGGUCCcgugauggcaucGUGCCg -3'
miRNA:   3'- -UAGUC-GUCgUGCaa-CG-CCAGG------------CACGG- -5'
1672 5' -56.9 NC_001347.2 + 190843 0.67 0.901889
Target:  5'- ---cGCGGCAUGUUGCGcG-CCGUGaUCu -3'
miRNA:   3'- uaguCGUCGUGCAACGC-CaGGCAC-GG- -5'
1672 5' -56.9 NC_001347.2 + 174976 0.67 0.901889
Target:  5'- -aCGuGCuGCAgGUauuuguggUGCGGgCCGUGCCg -3'
miRNA:   3'- uaGU-CGuCGUgCA--------ACGCCaGGCACGG- -5'
1672 5' -56.9 NC_001347.2 + 165546 0.67 0.889083
Target:  5'- --gGGCcgcgagAGCGCGUgcaCGGUCCG-GCCg -3'
miRNA:   3'- uagUCG------UCGUGCAac-GCCAGGCaCGG- -5'
1672 5' -56.9 NC_001347.2 + 172743 0.67 0.882356
Target:  5'- -cCAGCAGCuGCGaucUGUGaUCCGUGCg -3'
miRNA:   3'- uaGUCGUCG-UGCa--ACGCcAGGCACGg -5'
1672 5' -56.9 NC_001347.2 + 88040 0.67 0.882356
Target:  5'- cUgAGCGGCuGCGgaaUGCGGcCCGgGCCc -3'
miRNA:   3'- uAgUCGUCG-UGCa--ACGCCaGGCaCGG- -5'
1672 5' -56.9 NC_001347.2 + 119087 0.68 0.86827
Target:  5'- -cCAGCGGCGCagccgcgcuaUGCGGcCCG-GCCu -3'
miRNA:   3'- uaGUCGUCGUGca--------ACGCCaGGCaCGG- -5'
1672 5' -56.9 NC_001347.2 + 99584 0.68 0.842494
Target:  5'- cGUCGGgAGCGCGguggaagacagcGCGuGUCCGUucGCCg -3'
miRNA:   3'- -UAGUCgUCGUGCaa----------CGC-CAGGCA--CGG- -5'
1672 5' -56.9 NC_001347.2 + 154333 0.68 0.83772
Target:  5'- -gCAGCuGCACGaaGCGGUCgCG-GCUa -3'
miRNA:   3'- uaGUCGuCGUGCaaCGCCAG-GCaCGG- -5'
1672 5' -56.9 NC_001347.2 + 38373 0.68 0.83772
Target:  5'- uAUCGcGCacGGCGCGUccccgccgGCGGccuccgucUCCGUGCCg -3'
miRNA:   3'- -UAGU-CG--UCGUGCAa-------CGCC--------AGGCACGG- -5'
1672 5' -56.9 NC_001347.2 + 157300 0.69 0.821353
Target:  5'- -gCAGCAGCugG-UGCa-UCaCGUGCCa -3'
miRNA:   3'- uaGUCGUCGugCaACGccAG-GCACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.