miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1673 3' -47.1 NC_001347.2 + 39131 0.66 0.999996
Target:  5'- ---cGGcCGUCcGAGCGGcAGCAGCGu -3'
miRNA:   3'- uguuUCuGCAGcUUCGCCaUUGUUGC- -5'
1673 3' -47.1 NC_001347.2 + 76400 0.66 0.999996
Target:  5'- uGCGuguAGugGUCGuAGCGGcucucCAGCGc -3'
miRNA:   3'- -UGUu--UCugCAGCuUCGCCauu--GUUGC- -5'
1673 3' -47.1 NC_001347.2 + 90714 0.66 0.999994
Target:  5'- cUAGGGACGaCGAAGaCGaacgaGUGACGGCGc -3'
miRNA:   3'- uGUUUCUGCaGCUUC-GC-----CAUUGUUGC- -5'
1673 3' -47.1 NC_001347.2 + 112486 0.66 0.999994
Target:  5'- gACGAcGACGcCGccGCGGUuuccuuACGGCGu -3'
miRNA:   3'- -UGUUuCUGCaGCuuCGCCAu-----UGUUGC- -5'
1673 3' -47.1 NC_001347.2 + 48829 0.66 0.999992
Target:  5'- uAUAAAGaaaccacGCGUCaGGGCGGU-GCGGCGu -3'
miRNA:   3'- -UGUUUC-------UGCAGcUUCGCCAuUGUUGC- -5'
1673 3' -47.1 NC_001347.2 + 41158 0.66 0.999992
Target:  5'- cGCGcGGAaaucCGcCGcGGCGGUGGCGACu -3'
miRNA:   3'- -UGUuUCU----GCaGCuUCGCCAUUGUUGc -5'
1673 3' -47.1 NC_001347.2 + 26553 0.66 0.999992
Target:  5'- aACGuGGACGUUGuucGUGGccuGCAACGg -3'
miRNA:   3'- -UGUuUCUGCAGCuu-CGCCau-UGUUGC- -5'
1673 3' -47.1 NC_001347.2 + 184362 0.66 0.999992
Target:  5'- uGCucguGAGGCGgcacgCGuguGCGGgGACGACGg -3'
miRNA:   3'- -UGu---UUCUGCa----GCuu-CGCCaUUGUUGC- -5'
1673 3' -47.1 NC_001347.2 + 142427 0.66 0.999989
Target:  5'- cCAGuGGCGUCGgcGCGGcgucCGGCGu -3'
miRNA:   3'- uGUUuCUGCAGCuuCGCCauu-GUUGC- -5'
1673 3' -47.1 NC_001347.2 + 34322 0.66 0.999989
Target:  5'- gACGuGGGCGgCGAugagaacgucAGCGGUGGCGAa- -3'
miRNA:   3'- -UGUuUCUGCaGCU----------UCGCCAUUGUUgc -5'
1673 3' -47.1 NC_001347.2 + 17426 0.66 0.999989
Target:  5'- uCAAGGACGUagaCGAA-UGGUuugAGCAACGg -3'
miRNA:   3'- uGUUUCUGCA---GCUUcGCCA---UUGUUGC- -5'
1673 3' -47.1 NC_001347.2 + 165811 0.66 0.999984
Target:  5'- aGCGAGcGAUGUCGcccUGGUGGCAGCu -3'
miRNA:   3'- -UGUUU-CUGCAGCuucGCCAUUGUUGc -5'
1673 3' -47.1 NC_001347.2 + 228347 0.66 0.999984
Target:  5'- aGCAuguGGGugGUgCGAuGCGGUGgauguggcgggguGCGGCGg -3'
miRNA:   3'- -UGU---UUCugCA-GCUuCGCCAU-------------UGUUGC- -5'
1673 3' -47.1 NC_001347.2 + 153205 0.67 0.999978
Target:  5'- -gGAAGAUGUCGu-GCaGGUcguGCAGCGu -3'
miRNA:   3'- ugUUUCUGCAGCuuCG-CCAu--UGUUGC- -5'
1673 3' -47.1 NC_001347.2 + 82704 0.67 0.999978
Target:  5'- aACAGGG-UGUaCGGgugguGGCGGUGguGCAGCGg -3'
miRNA:   3'- -UGUUUCuGCA-GCU-----UCGCCAU--UGUUGC- -5'
1673 3' -47.1 NC_001347.2 + 43665 0.67 0.999978
Target:  5'- gACAGGcGCGUCGAGGgGGcaggAACAcccuuGCGg -3'
miRNA:   3'- -UGUUUcUGCAGCUUCgCCa---UUGU-----UGC- -5'
1673 3' -47.1 NC_001347.2 + 29723 0.67 0.999978
Target:  5'- gGCGAucugccuguuguGGugGcUgGGAGUGGUGGCGGCa -3'
miRNA:   3'- -UGUU------------UCugC-AgCUUCGCCAUUGUUGc -5'
1673 3' -47.1 NC_001347.2 + 60702 0.67 0.999971
Target:  5'- -gGAAGAUGg-GAcGUGGUAACGAUGg -3'
miRNA:   3'- ugUUUCUGCagCUuCGCCAUUGUUGC- -5'
1673 3' -47.1 NC_001347.2 + 184573 0.67 0.999971
Target:  5'- uGCGGuAGGCcUCGcuGUGGUAACAGCc -3'
miRNA:   3'- -UGUU-UCUGcAGCuuCGCCAUUGUUGc -5'
1673 3' -47.1 NC_001347.2 + 19246 0.67 0.99997
Target:  5'- aACGAGGACGacacgacggUCGAgggaacgAGCGGUGggccugaaGCGAUGg -3'
miRNA:   3'- -UGUUUCUGC---------AGCU-------UCGCCAU--------UGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.