miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1674 5' -52.6 NC_001347.2 + 90620 0.66 0.995534
Target:  5'- gACCuGAcGGcaguuGAGGGGGAGGAGacGGGGa -3'
miRNA:   3'- gUGG-CU-CCuu---CUCCUCCUUCUU--CUCC- -5'
1674 5' -52.6 NC_001347.2 + 90693 0.66 0.994827
Target:  5'- aCGCCGAGGAAGAcgacaccacuagGGAcGAcGAAGAc- -3'
miRNA:   3'- -GUGGCUCCUUCU------------CCUcCUuCUUCUcc -5'
1674 5' -52.6 NC_001347.2 + 144242 0.66 0.99215
Target:  5'- uGCuCGGGGAAaAGGcguuGGAcGggGAGGa -3'
miRNA:   3'- gUG-GCUCCUUcUCCu---CCUuCuuCUCC- -5'
1674 5' -52.6 NC_001347.2 + 31324 0.67 0.989823
Target:  5'- gCACCGcgccaccGGAAGGaccucacGGGAAGAAGAGGc -3'
miRNA:   3'- -GUGGCu------CCUUCUcc-----UCCUUCUUCUCC- -5'
1674 5' -52.6 NC_001347.2 + 84422 0.67 0.989823
Target:  5'- cCACCu-GGAcGGGGGGGAccGGggGcGGGg -3'
miRNA:   3'- -GUGGcuCCUuCUCCUCCU--UCuuC-UCC- -5'
1674 5' -52.6 NC_001347.2 + 135738 0.67 0.988331
Target:  5'- aACCGGGGuccgcGAcccagccccccguGGGGGGAGggGaAGGg -3'
miRNA:   3'- gUGGCUCCuu---CU-------------CCUCCUUCuuC-UCC- -5'
1674 5' -52.6 NC_001347.2 + 210263 0.67 0.985362
Target:  5'- gCugCGAuGGuGGAuccGGAGGggGGAacGAGGg -3'
miRNA:   3'- -GugGCU-CCuUCU---CCUCCuuCUU--CUCC- -5'
1674 5' -52.6 NC_001347.2 + 17223 0.67 0.985362
Target:  5'- gGCgGAcGAuGAGGAGcAGGGAGAGGa -3'
miRNA:   3'- gUGgCUcCUuCUCCUCcUUCUUCUCC- -5'
1674 5' -52.6 NC_001347.2 + 137112 0.67 0.985191
Target:  5'- aACaGAGGAAGGGGGcGGAuacccuaGGuAAGGGGg -3'
miRNA:   3'- gUGgCUCCUUCUCCU-CCU-------UC-UUCUCC- -5'
1674 5' -52.6 NC_001347.2 + 151196 0.68 0.984314
Target:  5'- aACgCG-GGAGGGGGAuucGGAGGAgagcagcgcguuaccGGAGGg -3'
miRNA:   3'- gUG-GCuCCUUCUCCU---CCUUCU---------------UCUCC- -5'
1674 5' -52.6 NC_001347.2 + 40669 0.68 0.984134
Target:  5'- gGCCGGGGAcGGGGGuugcgcuggggccGGGGcuguucgcgccgcguAGggGAGGu -3'
miRNA:   3'- gUGGCUCCU-UCUCC-------------UCCU---------------UCuuCUCC- -5'
1674 5' -52.6 NC_001347.2 + 77083 0.68 0.979543
Target:  5'- gCGgCGGcaGAAGAGGAGGcGGAGGAGu -3'
miRNA:   3'- -GUgGCUc-CUUCUCCUCCuUCUUCUCc -5'
1674 5' -52.6 NC_001347.2 + 177005 0.68 0.979543
Target:  5'- gUACCaGGGAGGAGG-GGuu-AAGAGGu -3'
miRNA:   3'- -GUGGcUCCUUCUCCuCCuucUUCUCC- -5'
1674 5' -52.6 NC_001347.2 + 152414 0.68 0.979543
Target:  5'- gCGgCGuGGAcuGGGAcGAGGAGGAGGg -3'
miRNA:   3'- -GUgGCuCCUucUCCUcCUUCUUCUCC- -5'
1674 5' -52.6 NC_001347.2 + 71395 0.68 0.977266
Target:  5'- --aUGGGGuuaGGGGGGAGGAAGAGa -3'
miRNA:   3'- gugGCUCCuucUCCUCCUUCUUCUCc -5'
1674 5' -52.6 NC_001347.2 + 67913 0.68 0.975812
Target:  5'- gCACCGugacGcGAGGAGGgccGGGAcucaccgucguucucGGAGGAGGg -3'
miRNA:   3'- -GUGGCu---C-CUUCUCC---UCCU---------------UCUUCUCC- -5'
1674 5' -52.6 NC_001347.2 + 225597 0.68 0.974807
Target:  5'- gGCCGGGaGAAGAcGGAGG-AGccGAGa -3'
miRNA:   3'- gUGGCUC-CUUCU-CCUCCuUCuuCUCc -5'
1674 5' -52.6 NC_001347.2 + 112210 0.69 0.963024
Target:  5'- uCGCCGGuGGGAGuacacacGGuaguaguaguugGGGAGGAAGAGGc -3'
miRNA:   3'- -GUGGCU-CCUUCu------CC------------UCCUUCUUCUCC- -5'
1674 5' -52.6 NC_001347.2 + 135232 0.71 0.918265
Target:  5'- gGCCGAugGGggGAGG-GGAGu-GGGGGa -3'
miRNA:   3'- gUGGCU--CCuuCUCCuCCUUcuUCUCC- -5'
1674 5' -52.6 NC_001347.2 + 79937 0.71 0.912516
Target:  5'- cCGCCGcgcuGGGAAcGAGGAG-AGGAAGAGu -3'
miRNA:   3'- -GUGGC----UCCUU-CUCCUCcUUCUUCUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.