miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1675 3' -61 NC_001347.2 + 111095 0.66 0.817112
Target:  5'- aUCAcccuCCGCGUCaCGCUGACCGGCGa-- -3'
miRNA:   3'- gAGU----GGCGUGG-GCGGCUGGUCGCaca -5'
1675 3' -61 NC_001347.2 + 85003 0.66 0.817112
Target:  5'- gUCGCaguggaaaaCGCGaCCGCCGGCCAGCa--- -3'
miRNA:   3'- gAGUG---------GCGUgGGCGGCUGGUCGcaca -5'
1675 3' -61 NC_001347.2 + 15293 0.66 0.800568
Target:  5'- gUCACCuGUGCCCGCaCcACCAcgaGCGUGc -3'
miRNA:   3'- gAGUGG-CGUGGGCG-GcUGGU---CGCACa -5'
1675 3' -61 NC_001347.2 + 1897 0.66 0.800568
Target:  5'- gUCugUGCugCgGCUGGCUGGCGcUGg -3'
miRNA:   3'- gAGugGCGugGgCGGCUGGUCGC-ACa -5'
1675 3' -61 NC_001347.2 + 114050 0.66 0.79209
Target:  5'- gUCACCGUcgcuACCCGCUcACCgAGCGa-- -3'
miRNA:   3'- gAGUGGCG----UGGGCGGcUGG-UCGCaca -5'
1675 3' -61 NC_001347.2 + 21380 0.66 0.783485
Target:  5'- gCUUACCGC-CaCCGUCGcccUCAGCGUGc -3'
miRNA:   3'- -GAGUGGCGuG-GGCGGCu--GGUCGCACa -5'
1675 3' -61 NC_001347.2 + 5505 0.66 0.783485
Target:  5'- uCUCGCCGUuCCCGUCGACU-GCa--- -3'
miRNA:   3'- -GAGUGGCGuGGGCGGCUGGuCGcaca -5'
1675 3' -61 NC_001347.2 + 94363 0.66 0.77476
Target:  5'- cCUCAucuCCGCcuggagcgcgGCCCGUggauCGGCCAGCGcUGUc -3'
miRNA:   3'- -GAGU---GGCG----------UGGGCG----GCUGGUCGC-ACA- -5'
1675 3' -61 NC_001347.2 + 103566 0.66 0.77476
Target:  5'- -aCGCCGCugCUGCaGGCCuGuCGUGa -3'
miRNA:   3'- gaGUGGCGugGGCGgCUGGuC-GCACa -5'
1675 3' -61 NC_001347.2 + 117845 0.67 0.765922
Target:  5'- -gCACCgGCGgCCGCUGACgCGGCGa-- -3'
miRNA:   3'- gaGUGG-CGUgGGCGGCUG-GUCGCaca -5'
1675 3' -61 NC_001347.2 + 17335 0.67 0.738808
Target:  5'- gUUGCCGCGCguauggCCGCCGGCCacgagAGCGaUGa -3'
miRNA:   3'- gAGUGGCGUG------GGCGGCUGG-----UCGC-ACa -5'
1675 3' -61 NC_001347.2 + 63922 0.67 0.738808
Target:  5'- -cCACCGCugCCGCCG-CCA-CGa-- -3'
miRNA:   3'- gaGUGGCGugGGCGGCuGGUcGCaca -5'
1675 3' -61 NC_001347.2 + 160689 0.68 0.710954
Target:  5'- cCUCGCCGCugCCuacgCGAUCGGCGg-- -3'
miRNA:   3'- -GAGUGGCGugGGcg--GCUGGUCGCaca -5'
1675 3' -61 NC_001347.2 + 161631 0.68 0.710954
Target:  5'- -cCACCGCcuggACCaUGUCGACCcgcGGCGUGg -3'
miRNA:   3'- gaGUGGCG----UGG-GCGGCUGG---UCGCACa -5'
1675 3' -61 NC_001347.2 + 6312 0.68 0.70154
Target:  5'- -aCGCCGUACCCcaaCGGCCgcgcaaGGCGUGa -3'
miRNA:   3'- gaGUGGCGUGGGcg-GCUGG------UCGCACa -5'
1675 3' -61 NC_001347.2 + 225855 0.68 0.692075
Target:  5'- -cCACCGCugCCGUCG-CCAccGCGUu- -3'
miRNA:   3'- gaGUGGCGugGGCGGCuGGU--CGCAca -5'
1675 3' -61 NC_001347.2 + 63114 0.68 0.692075
Target:  5'- -cCGCCGCGgCCGCCGcugugGCCGGaGUGc -3'
miRNA:   3'- gaGUGGCGUgGGCGGC-----UGGUCgCACa -5'
1675 3' -61 NC_001347.2 + 38256 0.68 0.673021
Target:  5'- --uGCCGCGUCCGCCccGACCAccGCGUGc -3'
miRNA:   3'- gagUGGCGUGGGCGG--CUGGU--CGCACa -5'
1675 3' -61 NC_001347.2 + 128510 0.68 0.673021
Target:  5'- -gCACCGCaACCCGCaagaGACCGuGCagGUGUu -3'
miRNA:   3'- gaGUGGCG-UGGGCGg---CUGGU-CG--CACA- -5'
1675 3' -61 NC_001347.2 + 214787 0.68 0.663445
Target:  5'- -aCGCUGUugCCGuuGAuaaCUAGCGUGUc -3'
miRNA:   3'- gaGUGGCGugGGCggCU---GGUCGCACA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.