miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1675 5' -56.7 NC_001347.2 + 126652 0.66 0.945523
Target:  5'- -gGCACGCG-CGCGguugcucgaguaCCGGcGcGUGGUGGc -3'
miRNA:   3'- aaUGUGCGUaGCGC------------GGCU-C-CACCACC- -5'
1675 5' -56.7 NC_001347.2 + 62341 0.66 0.941133
Target:  5'- cUACAUGCuggCGCGCCGGcGGgacUGGUc- -3'
miRNA:   3'- aAUGUGCGua-GCGCGGCU-CC---ACCAcc -5'
1675 5' -56.7 NC_001347.2 + 44120 0.66 0.941133
Target:  5'- aUACACGCGUgcaUGCuGCauGGGUGGaUGGu -3'
miRNA:   3'- aAUGUGCGUA---GCG-CGgcUCCACC-ACC- -5'
1675 5' -56.7 NC_001347.2 + 95471 0.66 0.941133
Target:  5'- -gGCGCGCGUCacgcgGCGCCGGuGUcGGcGGa -3'
miRNA:   3'- aaUGUGCGUAG-----CGCGGCUcCA-CCaCC- -5'
1675 5' -56.7 NC_001347.2 + 36653 0.66 0.936521
Target:  5'- gUACGCGCAUCcuGCGUCGGagcucagaccGGgcuccggcgGGUGGc -3'
miRNA:   3'- aAUGUGCGUAG--CGCGGCU----------CCa--------CCACC- -5'
1675 5' -56.7 NC_001347.2 + 2173 0.66 0.931685
Target:  5'- -aGCA-GCAgcgGCGCCGAcGGUgauGGUGGg -3'
miRNA:   3'- aaUGUgCGUag-CGCGGCU-CCA---CCACC- -5'
1675 5' -56.7 NC_001347.2 + 38767 0.66 0.926624
Target:  5'- -aGCA-GCGUCGCGCgCGGGGUGc--- -3'
miRNA:   3'- aaUGUgCGUAGCGCG-GCUCCACcacc -5'
1675 5' -56.7 NC_001347.2 + 77892 0.67 0.923479
Target:  5'- gUGCGCGUAgccaaCGCGCCcGAGGUacgcgucuucaagaaGGUGc -3'
miRNA:   3'- aAUGUGCGUa----GCGCGG-CUCCA---------------CCACc -5'
1675 5' -56.7 NC_001347.2 + 2135 0.67 0.921338
Target:  5'- -aACGCGgA-CGCGCaCGcGGUGGUcGGg -3'
miRNA:   3'- aaUGUGCgUaGCGCG-GCuCCACCA-CC- -5'
1675 5' -56.7 NC_001347.2 + 156857 0.67 0.921338
Target:  5'- -aGCACGUgaGUCGuCGgCGAGG-GGUGu -3'
miRNA:   3'- aaUGUGCG--UAGC-GCgGCUCCaCCACc -5'
1675 5' -56.7 NC_001347.2 + 136194 0.67 0.921338
Target:  5'- cUGC-CGCGgacUGCGCCGGGGggcGGcGGg -3'
miRNA:   3'- aAUGuGCGUa--GCGCGGCUCCa--CCaCC- -5'
1675 5' -56.7 NC_001347.2 + 1588 0.67 0.915827
Target:  5'- -gGCACGg--CGCgGgCGAGGUGGUGcGg -3'
miRNA:   3'- aaUGUGCguaGCG-CgGCUCCACCAC-C- -5'
1675 5' -56.7 NC_001347.2 + 136104 0.67 0.915827
Target:  5'- -gGCGCcggGCcUCG-GCCGGGGagGGUGGg -3'
miRNA:   3'- aaUGUG---CGuAGCgCGGCUCCa-CCACC- -5'
1675 5' -56.7 NC_001347.2 + 142438 0.67 0.904136
Target:  5'- -gGCGCgGCGUCcgGCGUCgGGGGUGGcGGu -3'
miRNA:   3'- aaUGUG-CGUAG--CGCGG-CUCCACCaCC- -5'
1675 5' -56.7 NC_001347.2 + 228051 0.68 0.884955
Target:  5'- aUACGCGgagaCGUCGUGgCGAGG-GGaUGGg -3'
miRNA:   3'- aAUGUGC----GUAGCGCgGCUCCaCC-ACC- -5'
1675 5' -56.7 NC_001347.2 + 112615 0.68 0.882252
Target:  5'- aUAC-CGCccggagaGUCGCGCCGAcGGUaauaggccggugauGGUGGc -3'
miRNA:   3'- aAUGuGCG-------UAGCGCGGCU-CCA--------------CCACC- -5'
1675 5' -56.7 NC_001347.2 + 198904 0.68 0.871109
Target:  5'- -aGCGCGC--CGCG-CGAGGUGuaGUGGg -3'
miRNA:   3'- aaUGUGCGuaGCGCgGCUCCAC--CACC- -5'
1675 5' -56.7 NC_001347.2 + 171711 0.68 0.871109
Target:  5'- cUGCGCGaguUgGUGaCCGAGGcGGUGGu -3'
miRNA:   3'- aAUGUGCgu-AgCGC-GGCUCCaCCACC- -5'
1675 5' -56.7 NC_001347.2 + 29237 0.68 0.871109
Target:  5'- cUACGCGgAUCGaguGCCGAcgccGGUGGaGGa -3'
miRNA:   3'- aAUGUGCgUAGCg--CGGCU----CCACCaCC- -5'
1675 5' -56.7 NC_001347.2 + 169129 0.68 0.848842
Target:  5'- -cGCGCGCGcCGCGCUGcaGUGGcUGGa -3'
miRNA:   3'- aaUGUGCGUaGCGCGGCucCACC-ACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.