miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1676 3' -44.5 NC_001347.2 + 115749 0.66 1
Target:  5'- aGGGaUCUGACAGCcuag-CCACGGUa -3'
miRNA:   3'- -CCUaAGGCUGUUGcuuuaGGUGUUAg -5'
1676 3' -44.5 NC_001347.2 + 151300 0.67 1
Target:  5'- gGGAcaCgGACAGCGuguuuGUCCGCuuUCg -3'
miRNA:   3'- -CCUaaGgCUGUUGCuu---UAGGUGuuAG- -5'
1676 3' -44.5 NC_001347.2 + 121142 0.67 1
Target:  5'- uGGAUcCCuACAACGAAGugguggucucaucUCCGCGAacUCa -3'
miRNA:   3'- -CCUAaGGcUGUUGCUUU-------------AGGUGUU--AG- -5'
1676 3' -44.5 NC_001347.2 + 185548 0.67 1
Target:  5'- cGAUuggCCGuCGGCG---UCCGCAGUCg -3'
miRNA:   3'- cCUAa--GGCuGUUGCuuuAGGUGUUAG- -5'
1676 3' -44.5 NC_001347.2 + 14265 0.67 1
Target:  5'- cGGGUUCUGGCccuGACGGcg-CUGCAGUUa -3'
miRNA:   3'- -CCUAAGGCUG---UUGCUuuaGGUGUUAG- -5'
1676 3' -44.5 NC_001347.2 + 47051 0.67 1
Target:  5'- uGGAggCCGGCGACGuuaacugCUACAGc- -3'
miRNA:   3'- -CCUaaGGCUGUUGCuuua---GGUGUUag -5'
1676 3' -44.5 NC_001347.2 + 38990 0.66 1
Target:  5'- cGGG--UCGGCuGCGggGUCCACc-UCg -3'
miRNA:   3'- -CCUaaGGCUGuUGCuuUAGGUGuuAG- -5'
1676 3' -44.5 NC_001347.2 + 112994 0.66 1
Target:  5'- uGGAggagCCGuaGCGGCGGGAaCCGCAGcacUCa -3'
miRNA:   3'- -CCUaa--GGC--UGUUGCUUUaGGUGUU---AG- -5'
1676 3' -44.5 NC_001347.2 + 8824 0.66 1
Target:  5'- cGGA--CCGugggcGCGACGAAAcCCACcGUCa -3'
miRNA:   3'- -CCUaaGGC-----UGUUGCUUUaGGUGuUAG- -5'
1676 3' -44.5 NC_001347.2 + 140665 0.66 1
Target:  5'- gGGAUUCCGGgggaaUGAUGggGcgCgGCGGUCg -3'
miRNA:   3'- -CCUAAGGCU-----GUUGCuuUa-GgUGUUAG- -5'
1676 3' -44.5 NC_001347.2 + 143673 0.66 1
Target:  5'- cGGAggCCGGCcugGAGGUCUGCGcgCa -3'
miRNA:   3'- -CCUaaGGCUGuugCUUUAGGUGUuaG- -5'
1676 3' -44.5 NC_001347.2 + 26280 0.66 1
Target:  5'- cGGAUUgCUGACGcUGGAAaCCGCuuUCa -3'
miRNA:   3'- -CCUAA-GGCUGUuGCUUUaGGUGuuAG- -5'
1676 3' -44.5 NC_001347.2 + 149694 0.68 0.999999
Target:  5'- uGGGc-CCGACGugGAcGUCUACGAg- -3'
miRNA:   3'- -CCUaaGGCUGUugCUuUAGGUGUUag -5'
1676 3' -44.5 NC_001347.2 + 41352 0.68 0.999999
Target:  5'- cGAUUCCGAgGACGgcGUCUcu-GUCu -3'
miRNA:   3'- cCUAAGGCUgUUGCuuUAGGuguUAG- -5'
1676 3' -44.5 NC_001347.2 + 126484 0.68 0.999999
Target:  5'- --cUUCCGuCAGCGcguGUCCGCuuUCg -3'
miRNA:   3'- ccuAAGGCuGUUGCuu-UAGGUGuuAG- -5'
1676 3' -44.5 NC_001347.2 + 2199 0.68 0.999999
Target:  5'- uGGGUU-CGACAGCGAuggcgGGUCCgGCGgcGUCg -3'
miRNA:   3'- -CCUAAgGCUGUUGCU-----UUAGG-UGU--UAG- -5'
1676 3' -44.5 NC_001347.2 + 207769 0.68 0.999998
Target:  5'- aGGAgag-GACAACGAGGUCCcCGGUa -3'
miRNA:   3'- -CCUaaggCUGUUGCUUUAGGuGUUAg -5'
1676 3' -44.5 NC_001347.2 + 13047 0.68 0.999998
Target:  5'- cGGA-UCCGACc-CGAcuAUCCACAAa- -3'
miRNA:   3'- -CCUaAGGCUGuuGCUu-UAGGUGUUag -5'
1676 3' -44.5 NC_001347.2 + 142442 0.68 0.999998
Target:  5'- cGGcgUCCGGCGuCGGGggUgGCGGUCu -3'
miRNA:   3'- -CCuaAGGCUGUuGCUUuaGgUGUUAG- -5'
1676 3' -44.5 NC_001347.2 + 195782 0.68 0.999998
Target:  5'- cGGcgcaCGGCAaguACGAcAUCCGCGGUCu -3'
miRNA:   3'- -CCuaagGCUGU---UGCUuUAGGUGUUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.