miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1676 5' -65.3 NC_001347.2 + 148830 0.66 0.615566
Target:  5'- gUC-CUUGGCgCGagaCCCUGGUGGGUCGcGUg -3'
miRNA:   3'- -AGuGGACCG-GC---GGGACCGUCCGGC-CG- -5'
1676 5' -65.3 NC_001347.2 + 95409 0.66 0.614625
Target:  5'- cCGCCagcaacgaguucaUGGCgGCUgUGGCGGGUC-GCg -3'
miRNA:   3'- aGUGG-------------ACCGgCGGgACCGUCCGGcCG- -5'
1676 5' -65.3 NC_001347.2 + 92539 0.66 0.614625
Target:  5'- gUCACCUGGCUaaagCUUGGCAagaaaucgaugcuGGCUGGa -3'
miRNA:   3'- -AGUGGACCGGcg--GGACCGU-------------CCGGCCg -5'
1676 5' -65.3 NC_001347.2 + 199680 0.66 0.606158
Target:  5'- -gACUU-GCCgGCCUUGGguGucGCCGGCg -3'
miRNA:   3'- agUGGAcCGG-CGGGACCguC--CGGCCG- -5'
1676 5' -65.3 NC_001347.2 + 155120 0.66 0.606158
Target:  5'- uUUACCUgguaugaggcGGCCGCCgC-GGC-GGCCaGCg -3'
miRNA:   3'- -AGUGGA----------CCGGCGG-GaCCGuCCGGcCG- -5'
1676 5' -65.3 NC_001347.2 + 94316 0.66 0.596767
Target:  5'- aUCGCCgcccacGG-CGUCCUcGGCgucgucggAGGCCGGUg -3'
miRNA:   3'- -AGUGGa-----CCgGCGGGA-CCG--------UCCGGCCG- -5'
1676 5' -65.3 NC_001347.2 + 193098 0.66 0.596767
Target:  5'- gUCGCaagGGCUGCUC-GGC-GGCCacGGCg -3'
miRNA:   3'- -AGUGga-CCGGCGGGaCCGuCCGG--CCG- -5'
1676 5' -65.3 NC_001347.2 + 1713 0.66 0.587397
Target:  5'- gCGCUcggacggGaGCUGCgCCggcGGUGGGCCGGCa -3'
miRNA:   3'- aGUGGa------C-CGGCG-GGa--CCGUCCGGCCG- -5'
1676 5' -65.3 NC_001347.2 + 2660 0.66 0.587397
Target:  5'- -gACUUGGCCaCggUGGUuauggAGGCCGGCg -3'
miRNA:   3'- agUGGACCGGcGggACCG-----UCCGGCCG- -5'
1676 5' -65.3 NC_001347.2 + 87755 0.66 0.587397
Target:  5'- cUCGCCgaaGGa-GCCCUGGCccAGG-CGGUa -3'
miRNA:   3'- -AGUGGa--CCggCGGGACCG--UCCgGCCG- -5'
1676 5' -65.3 NC_001347.2 + 31130 0.66 0.587397
Target:  5'- gCGuCCaGGCUGCCCUGGUu-GCCGcuGCg -3'
miRNA:   3'- aGU-GGaCCGGCGGGACCGucCGGC--CG- -5'
1676 5' -65.3 NC_001347.2 + 156654 0.66 0.584592
Target:  5'- -gGCCUcGGCCGCCgccgccacccauggcGGCGGGUCguGGCg -3'
miRNA:   3'- agUGGA-CCGGCGGga-------------CCGUCCGG--CCG- -5'
1676 5' -65.3 NC_001347.2 + 88597 0.66 0.578056
Target:  5'- -aGCCUGGgCGaCCUGaGCGGcGgCGGCc -3'
miRNA:   3'- agUGGACCgGCgGGAC-CGUC-CgGCCG- -5'
1676 5' -65.3 NC_001347.2 + 135652 0.66 0.578056
Target:  5'- cCGCaggGGCCcaaaaGCCagcaaGGCGGGCCGGg -3'
miRNA:   3'- aGUGga-CCGG-----CGGga---CCGUCCGGCCg -5'
1676 5' -65.3 NC_001347.2 + 1796 0.66 0.578056
Target:  5'- aCugCUGGgCG-CgUGGCAGgaGCUGGCg -3'
miRNA:   3'- aGugGACCgGCgGgACCGUC--CGGCCG- -5'
1676 5' -65.3 NC_001347.2 + 24647 0.66 0.568746
Target:  5'- cUCGCC-GGCC-UCCUGGCGcacaucCCGGCg -3'
miRNA:   3'- -AGUGGaCCGGcGGGACCGUcc----GGCCG- -5'
1676 5' -65.3 NC_001347.2 + 165621 0.67 0.541065
Target:  5'- -gACCggcaGCCGCCCgccGGCGGGCa-GCu -3'
miRNA:   3'- agUGGac--CGGCGGGa--CCGUCCGgcCG- -5'
1676 5' -65.3 NC_001347.2 + 126628 0.67 0.531935
Target:  5'- cUACCUGGCCuaCCgcacGGC--GCUGGCa -3'
miRNA:   3'- aGUGGACCGGcgGGa---CCGucCGGCCG- -5'
1676 5' -65.3 NC_001347.2 + 142973 0.67 0.522862
Target:  5'- -aGCCcccGUCGCCCgaGGCGGaggaGCCGGCg -3'
miRNA:   3'- agUGGac-CGGCGGGa-CCGUC----CGGCCG- -5'
1676 5' -65.3 NC_001347.2 + 81713 0.67 0.513849
Target:  5'- cCACCUccagcuugccGGCCgaGCCCacgaugucgGGCAGGCC-GCa -3'
miRNA:   3'- aGUGGA----------CCGG--CGGGa--------CCGUCCGGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.