miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1682 3' -53.9 NC_001347.2 + 182773 0.66 0.986251
Target:  5'- cGCAGG-UAGCGGCuGGGcUguUCUGGcACg -3'
miRNA:   3'- -CGUCCaAUCGCCG-CUC-AguGGAUC-UG- -5'
1682 3' -53.9 NC_001347.2 + 228100 0.66 0.986088
Target:  5'- aGCAGcgUGGCGGCGAaagacgcGaUC-CCUGGGCu -3'
miRNA:   3'- -CGUCcaAUCGCCGCU-------C-AGuGGAUCUG- -5'
1682 3' -53.9 NC_001347.2 + 174997 0.66 0.984551
Target:  5'- uGCGGGccgUGcCGGUgGAGUCgcagcagcGCCUGGACa -3'
miRNA:   3'- -CGUCCa--AUcGCCG-CUCAG--------UGGAUCUG- -5'
1682 3' -53.9 NC_001347.2 + 7896 0.66 0.984551
Target:  5'- aGguGGUcagUGGCGGCGAcaagGcCGCCUGaGCc -3'
miRNA:   3'- -CguCCA---AUCGCCGCU----CaGUGGAUcUG- -5'
1682 3' -53.9 NC_001347.2 + 135810 0.66 0.980677
Target:  5'- gGCGGGUggaccgggaAGcCGGCGgaGGUCGCCgGGAg -3'
miRNA:   3'- -CGUCCAa--------UC-GCCGC--UCAGUGGaUCUg -5'
1682 3' -53.9 NC_001347.2 + 189863 0.66 0.978487
Target:  5'- aGCGG--UAGCGcGcCGGGUCGCCUGuccGGCa -3'
miRNA:   3'- -CGUCcaAUCGC-C-GCUCAGUGGAU---CUG- -5'
1682 3' -53.9 NC_001347.2 + 170050 0.67 0.967876
Target:  5'- aGCGGGUuuuacgaguggUGGCGGCGucGUCAgUUGG-Cg -3'
miRNA:   3'- -CGUCCA-----------AUCGCCGCu-CAGUgGAUCuG- -5'
1682 3' -53.9 NC_001347.2 + 193012 0.67 0.964727
Target:  5'- aCGGGgUGGa-GCGGGUCGCCgAGGCu -3'
miRNA:   3'- cGUCCaAUCgcCGCUCAGUGGaUCUG- -5'
1682 3' -53.9 NC_001347.2 + 156682 0.68 0.957793
Target:  5'- gGCGGGUcgUGGCGGCuGuGUCguugugagGCCUguaugGGACg -3'
miRNA:   3'- -CGUCCA--AUCGCCG-CuCAG--------UGGA-----UCUG- -5'
1682 3' -53.9 NC_001347.2 + 152359 0.68 0.957793
Target:  5'- uGguGGUgagagUAGUGGUGGggcugcGUCGCCUGcGACg -3'
miRNA:   3'- -CguCCA-----AUCGCCGCU------CAGUGGAU-CUG- -5'
1682 3' -53.9 NC_001347.2 + 85287 0.68 0.945734
Target:  5'- -aAGGUaucggcGGCGGCGAaUCGCCcGGGCu -3'
miRNA:   3'- cgUCCAa-----UCGCCGCUcAGUGGaUCUG- -5'
1682 3' -53.9 NC_001347.2 + 1982 0.69 0.932112
Target:  5'- gGCGGGgacgacgucccgccAGCGGCGAGcggCACggAGACg -3'
miRNA:   3'- -CGUCCaa------------UCGCCGCUCa--GUGgaUCUG- -5'
1682 3' -53.9 NC_001347.2 + 150781 0.69 0.926431
Target:  5'- uGCuGGUgccgGGUGGCGAG-UACCcugUGGACc -3'
miRNA:   3'- -CGuCCAa---UCGCCGCUCaGUGG---AUCUG- -5'
1682 3' -53.9 NC_001347.2 + 82725 0.69 0.9259
Target:  5'- cGguGGUgcAGCGGCGgcugagcGGUCAuCCUcGGACa -3'
miRNA:   3'- -CguCCAa-UCGCCGC-------UCAGU-GGA-UCUG- -5'
1682 3' -53.9 NC_001347.2 + 182202 0.69 0.921019
Target:  5'- -gGGGUgcgGGUGGCGGgcugcGUCGCCUucgguGACg -3'
miRNA:   3'- cgUCCAa--UCGCCGCU-----CAGUGGAu----CUG- -5'
1682 3' -53.9 NC_001347.2 + 77866 0.69 0.915373
Target:  5'- uGCAGG-UGGC--CGAG-CGCCUGGGCg -3'
miRNA:   3'- -CGUCCaAUCGccGCUCaGUGGAUCUG- -5'
1682 3' -53.9 NC_001347.2 + 118545 0.69 0.915373
Target:  5'- uGCAGGcugugGGUGGCGuGcCACCgcacGGACu -3'
miRNA:   3'- -CGUCCaa---UCGCCGCuCaGUGGa---UCUG- -5'
1682 3' -53.9 NC_001347.2 + 36571 0.69 0.909494
Target:  5'- uGCGGGaacuggccUGGCGGCGGGUaGCCgacGACu -3'
miRNA:   3'- -CGUCCa-------AUCGCCGCUCAgUGGau-CUG- -5'
1682 3' -53.9 NC_001347.2 + 39516 0.69 0.909494
Target:  5'- gGCGGGggGcGCGGCGAcaugccGUUGCgCUGGGCc -3'
miRNA:   3'- -CGUCCaaU-CGCCGCU------CAGUG-GAUCUG- -5'
1682 3' -53.9 NC_001347.2 + 65948 0.7 0.897041
Target:  5'- aCGGGUUucAGCGuccggccuCGGGUUGCCUGGACg -3'
miRNA:   3'- cGUCCAA--UCGCc-------GCUCAGUGGAUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.