miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1682 3' -53.9 NC_001347.2 + 105099 1.13 0.003779
Target:  5'- cGCAGGUUAGCGGCGAGUCACCUAGACg -3'
miRNA:   3'- -CGUCCAAUCGCCGCUCAGUGGAUCUG- -5'
1682 3' -53.9 NC_001347.2 + 59458 0.75 0.629911
Target:  5'- -gAGGUggauGCGGUGcgguGUCGCCUGGGCa -3'
miRNA:   3'- cgUCCAau--CGCCGCu---CAGUGGAUCUG- -5'
1682 3' -53.9 NC_001347.2 + 117897 0.74 0.710434
Target:  5'- aCGGGgcGGCGGCGGGUC-CCgugauGGCa -3'
miRNA:   3'- cGUCCaaUCGCCGCUCAGuGGau---CUG- -5'
1682 3' -53.9 NC_001347.2 + 75968 0.73 0.73979
Target:  5'- aCGGGcu-GCGGCGAGUCGCCcAG-Cg -3'
miRNA:   3'- cGUCCaauCGCCGCUCAGUGGaUCuG- -5'
1682 3' -53.9 NC_001347.2 + 151273 0.73 0.73979
Target:  5'- gGCGGGUggaGGC-GCGGGUCAUCUacggGGACa -3'
miRNA:   3'- -CGUCCAa--UCGcCGCUCAGUGGA----UCUG- -5'
1682 3' -53.9 NC_001347.2 + 184658 0.71 0.862015
Target:  5'- uGCAGG-UAGUGGCGcaGGUguCCgaugAGACg -3'
miRNA:   3'- -CGUCCaAUCGCCGC--UCAguGGa---UCUG- -5'
1682 3' -53.9 NC_001347.2 + 198377 0.7 0.876673
Target:  5'- cGCAGGUgggUGGCGcGCGGGUCGCg----- -3'
miRNA:   3'- -CGUCCA---AUCGC-CGCUCAGUGgaucug -5'
1682 3' -53.9 NC_001347.2 + 183442 0.7 0.882298
Target:  5'- aGCAGGUUguaGGUGGUGAGgcgcggauagcgCGCCUcGGCc -3'
miRNA:   3'- -CGUCCAA---UCGCCGCUCa-----------GUGGAuCUG- -5'
1682 3' -53.9 NC_001347.2 + 65948 0.7 0.897041
Target:  5'- aCGGGUUucAGCGuccggccuCGGGUUGCCUGGACg -3'
miRNA:   3'- cGUCCAA--UCGCc-------GCUCAGUGGAUCUG- -5'
1682 3' -53.9 NC_001347.2 + 36571 0.69 0.909494
Target:  5'- uGCGGGaacuggccUGGCGGCGGGUaGCCgacGACu -3'
miRNA:   3'- -CGUCCa-------AUCGCCGCUCAgUGGau-CUG- -5'
1682 3' -53.9 NC_001347.2 + 39516 0.69 0.909494
Target:  5'- gGCGGGggGcGCGGCGAcaugccGUUGCgCUGGGCc -3'
miRNA:   3'- -CGUCCaaU-CGCCGCU------CAGUG-GAUCUG- -5'
1682 3' -53.9 NC_001347.2 + 77866 0.69 0.915373
Target:  5'- uGCAGG-UGGC--CGAG-CGCCUGGGCg -3'
miRNA:   3'- -CGUCCaAUCGccGCUCaGUGGAUCUG- -5'
1682 3' -53.9 NC_001347.2 + 118545 0.69 0.915373
Target:  5'- uGCAGGcugugGGUGGCGuGcCACCgcacGGACu -3'
miRNA:   3'- -CGUCCaa---UCGCCGCuCaGUGGa---UCUG- -5'
1682 3' -53.9 NC_001347.2 + 182202 0.69 0.921019
Target:  5'- -gGGGUgcgGGUGGCGGgcugcGUCGCCUucgguGACg -3'
miRNA:   3'- cgUCCAa--UCGCCGCU-----CAGUGGAu----CUG- -5'
1682 3' -53.9 NC_001347.2 + 82725 0.69 0.9259
Target:  5'- cGguGGUgcAGCGGCGgcugagcGGUCAuCCUcGGACa -3'
miRNA:   3'- -CguCCAa-UCGCCGC-------UCAGU-GGA-UCUG- -5'
1682 3' -53.9 NC_001347.2 + 150781 0.69 0.926431
Target:  5'- uGCuGGUgccgGGUGGCGAG-UACCcugUGGACc -3'
miRNA:   3'- -CGuCCAa---UCGCCGCUCaGUGG---AUCUG- -5'
1682 3' -53.9 NC_001347.2 + 1982 0.69 0.932112
Target:  5'- gGCGGGgacgacgucccgccAGCGGCGAGcggCACggAGACg -3'
miRNA:   3'- -CGUCCaa------------UCGCCGCUCa--GUGgaUCUG- -5'
1682 3' -53.9 NC_001347.2 + 85287 0.68 0.945734
Target:  5'- -aAGGUaucggcGGCGGCGAaUCGCCcGGGCu -3'
miRNA:   3'- cgUCCAa-----UCGCCGCUcAGUGGaUCUG- -5'
1682 3' -53.9 NC_001347.2 + 152359 0.68 0.957793
Target:  5'- uGguGGUgagagUAGUGGUGGggcugcGUCGCCUGcGACg -3'
miRNA:   3'- -CguCCA-----AUCGCCGCU------CAGUGGAU-CUG- -5'
1682 3' -53.9 NC_001347.2 + 156682 0.68 0.957793
Target:  5'- gGCGGGUcgUGGCGGCuGuGUCguugugagGCCUguaugGGACg -3'
miRNA:   3'- -CGUCCA--AUCGCCG-CuCAG--------UGGA-----UCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.