Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1683 | 5' | -56 | NC_001347.2 | + | 811 | 0.72 | 0.636145 |
Target: 5'- uAAACCgCGUGCuCG-CUGACGCGGGu- -3' miRNA: 3'- uUUUGG-GCACG-GCaGACUGCGUCCuu -5' |
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1683 | 5' | -56 | NC_001347.2 | + | 89747 | 0.66 | 0.919138 |
Target: 5'- --cGCCUGcGgCGUC-GGCGCAGGGAa -3' miRNA: 3'- uuuUGGGCaCgGCAGaCUGCGUCCUU- -5' |
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1683 | 5' | -56 | NC_001347.2 | + | 104890 | 1.04 | 0.00759 |
Target: 5'- gAAAACCCGUGCCGUCUGACGCAGGAAg -3' miRNA: 3'- -UUUUGGGCACGGCAGACUGCGUCCUU- -5' |
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1683 | 5' | -56 | NC_001347.2 | + | 117841 | 0.71 | 0.706715 |
Target: 5'- aGAAGCaCCGgcgGCCG-CUGACGCGGcGAc -3' miRNA: 3'- -UUUUG-GGCa--CGGCaGACUGCGUC-CUu -5' |
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1683 | 5' | -56 | NC_001347.2 | + | 135959 | 0.7 | 0.764882 |
Target: 5'- -cAGCCCGgccggGCCGUCgGAUGgGGGGGu -3' miRNA: 3'- uuUUGGGCa----CGGCAGaCUGCgUCCUU- -5' |
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1683 | 5' | -56 | NC_001347.2 | + | 153718 | 0.74 | 0.54548 |
Target: 5'- --uGCCCGUgacGCCuGcCUGACGCAGGAc -3' miRNA: 3'- uuuUGGGCA---CGG-CaGACUGCGUCCUu -5' |
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1683 | 5' | -56 | NC_001347.2 | + | 164367 | 0.68 | 0.866876 |
Target: 5'- uGAGCgCCGgGCCGUgCUGACGUccguAGGGAu -3' miRNA: 3'- uUUUG-GGCaCGGCA-GACUGCG----UCCUU- -5' |
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1683 | 5' | -56 | NC_001347.2 | + | 179239 | 0.67 | 0.888156 |
Target: 5'- aAAAGuCCCGUGUCGUCUccACGUAGGu- -3' miRNA: 3'- -UUUU-GGGCACGGCAGAc-UGCGUCCuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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