miRNA display CGI


Results 1 - 6 of 6 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16895 3' -43.9 NC_004305.1 + 3173 0.67 0.996495
Target:  5'- ---gGCAAAAAAGGAccagACGCUGAUCGc -3'
miRNA:   3'- cgcgUGUUUUUUUCU----UGCGGUUAGCa -5'
16895 3' -43.9 NC_004305.1 + 26837 0.68 0.992922
Target:  5'- aGCGCcaacugauACGuuuGAAGGugGCCGGUCa- -3'
miRNA:   3'- -CGCG--------UGUuuuUUUCUugCGGUUAGca -5'
16895 3' -43.9 NC_004305.1 + 20944 0.7 0.971346
Target:  5'- --cCAUAAAGAAGGcAGCGCCAuUCGUu -3'
miRNA:   3'- cgcGUGUUUUUUUC-UUGCGGUuAGCA- -5'
16895 3' -43.9 NC_004305.1 + 33411 0.72 0.928288
Target:  5'- cGCGCACG-----AGAACGCgGAUCu- -3'
miRNA:   3'- -CGCGUGUuuuuuUCUUGCGgUUAGca -5'
16895 3' -43.9 NC_004305.1 + 7112 0.77 0.742508
Target:  5'- aGgGCACAAAAAAAGAcccGCGCCAGc--- -3'
miRNA:   3'- -CgCGUGUUUUUUUCU---UGCGGUUagca -5'
16895 3' -43.9 NC_004305.1 + 4190 1.11 0.009296
Target:  5'- uGCGCACAAAAAAAGAACGCCAAUCGUu -3'
miRNA:   3'- -CGCGUGUUUUUUUCUUGCGGUUAGCA- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.