miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16898 3' -46.7 NC_004305.1 + 6287 0.67 0.971318
Target:  5'- --uUGUuucaaACGUugGCGAuUAUAUGGUCGCUa -3'
miRNA:   3'- auuACG-----UGCA--UGUU-GUAUACCAGCGG- -5'
16898 3' -46.7 NC_004305.1 + 12478 0.67 0.967851
Target:  5'- cAGUGuCGCGUAagaauACGUugGGUUGCCa -3'
miRNA:   3'- aUUAC-GUGCAUgu---UGUAuaCCAGCGG- -5'
16898 3' -46.7 NC_004305.1 + 27810 0.68 0.946039
Target:  5'- ---cGCACccacGCAAUcuugAUAUGGUUGCCg -3'
miRNA:   3'- auuaCGUGca--UGUUG----UAUACCAGCGG- -5'
16898 3' -46.7 NC_004305.1 + 3792 0.71 0.816893
Target:  5'- gUAGUGgGCGUGCAACGcuuuuaagacacgcAUGGUUGUCg -3'
miRNA:   3'- -AUUACgUGCAUGUUGUa-------------UACCAGCGG- -5'
16898 3' -46.7 NC_004305.1 + 16089 1.13 0.002964
Target:  5'- uUAAUGCACGUACAACAUAUGGUCGCCa -3'
miRNA:   3'- -AUUACGUGCAUGUUGUAUACCAGCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.