miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16906 5' -47 NC_004305.1 + 28577 0.66 0.978963
Target:  5'- --cGGCCGACCGCU----UCCAcgcuuucuuauGCCAu -3'
miRNA:   3'- gaaUUGGUUGGCGGuaauAGGU-----------UGGU- -5'
16906 5' -47 NC_004305.1 + 40645 0.66 0.978963
Target:  5'- gCUUAACCAAUCGCuCAUgcgcUCCGcAUCu -3'
miRNA:   3'- -GAAUUGGUUGGCG-GUAau--AGGU-UGGu -5'
16906 5' -47 NC_004305.1 + 10500 0.66 0.969866
Target:  5'- --gAGCUAGCUGCUAacaugauUCCAGCCu -3'
miRNA:   3'- gaaUUGGUUGGCGGUaau----AGGUUGGu -5'
16906 5' -47 NC_004305.1 + 16778 0.67 0.962421
Target:  5'- gUUAACCAACCaGgCA--AUCCAAUCu -3'
miRNA:   3'- gAAUUGGUUGG-CgGUaaUAGGUUGGu -5'
16906 5' -47 NC_004305.1 + 33669 0.68 0.938476
Target:  5'- aCUUAAUCAucgUCGCCAUc-UCCAAUCAu -3'
miRNA:   3'- -GAAUUGGUu--GGCGGUAauAGGUUGGU- -5'
16906 5' -47 NC_004305.1 + 5087 0.68 0.938476
Target:  5'- uUUGACUGGCCGUCA--GUuuGGCCAu -3'
miRNA:   3'- gAAUUGGUUGGCGGUaaUAggUUGGU- -5'
16906 5' -47 NC_004305.1 + 23237 0.68 0.920249
Target:  5'- gCUUAGCaCGgaauGCuUGCCAUUGggugCCAGCCAa -3'
miRNA:   3'- -GAAUUG-GU----UG-GCGGUAAUa---GGUUGGU- -5'
16906 5' -47 NC_004305.1 + 12813 0.69 0.899088
Target:  5'- ---uACCAACgUGcCCAgaGUCCAGCCAg -3'
miRNA:   3'- gaauUGGUUG-GC-GGUaaUAGGUUGGU- -5'
16906 5' -47 NC_004305.1 + 5095 0.7 0.883389
Target:  5'- uUUGACC-ACCGCU---GUUCAGCCGu -3'
miRNA:   3'- gAAUUGGuUGGCGGuaaUAGGUUGGU- -5'
16906 5' -47 NC_004305.1 + 12278 0.7 0.883389
Target:  5'- uUUAACCAGaguaCGCCGaucUUGUCCAAUa- -3'
miRNA:   3'- gAAUUGGUUg---GCGGU---AAUAGGUUGgu -5'
16906 5' -47 NC_004305.1 + 26387 0.71 0.838953
Target:  5'- gUUAACCAGUCGUUAUUGUCC-ACUAa -3'
miRNA:   3'- gAAUUGGUUGGCGGUAAUAGGuUGGU- -5'
16906 5' -47 NC_004305.1 + 24658 0.71 0.798721
Target:  5'- uCUUGACaguuuguuuGCCGCCAUUGUCUucACCu -3'
miRNA:   3'- -GAAUUGgu-------UGGCGGUAAUAGGu-UGGu -5'
16906 5' -47 NC_004305.1 + 36866 1.1 0.004133
Target:  5'- gCUUAACCAACCGCCAUUAUCCAACCAg -3'
miRNA:   3'- -GAAUUGGUUGGCGGUAAUAGGUUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.