miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16911 5' -55.2 NC_004313.1 + 6163 0.66 0.637206
Target:  5'- uGUGGCGCUGG--------UCUGCGCCu -3'
miRNA:   3'- -CACCGCGGCCucauaugaAGGCGUGG- -5'
16911 5' -55.2 NC_004313.1 + 961 0.66 0.625946
Target:  5'- -aGGCGUgGGAG-GUAUUUcgucCCGCGCg -3'
miRNA:   3'- caCCGCGgCCUCaUAUGAA----GGCGUGg -5'
16911 5' -55.2 NC_004313.1 + 3348 0.66 0.614691
Target:  5'- gGUGGCGCgauCGGuGU-----UCUGCACCa -3'
miRNA:   3'- -CACCGCG---GCCuCAuaugaAGGCGUGG- -5'
16911 5' -55.2 NC_004313.1 + 37904 0.66 0.614691
Target:  5'- -aGGuCGCCGGAGUAU--UUCaGaCACCc -3'
miRNA:   3'- caCC-GCGGCCUCAUAugAAGgC-GUGG- -5'
16911 5' -55.2 NC_004313.1 + 10990 0.68 0.526005
Target:  5'- uGUGGcCGCgCGGGaugcGUAUucCUUCUGCAUCg -3'
miRNA:   3'- -CACC-GCG-GCCU----CAUAu-GAAGGCGUGG- -5'
16911 5' -55.2 NC_004313.1 + 9905 0.68 0.515217
Target:  5'- cUGGaGCUGGAGUuggagGCUgUCCGUAUCa -3'
miRNA:   3'- cACCgCGGCCUCAua---UGA-AGGCGUGG- -5'
16911 5' -55.2 NC_004313.1 + 16645 0.69 0.452597
Target:  5'- --uGCGuuGGGGUAUACcgCUGcCACCa -3'
miRNA:   3'- cacCGCggCCUCAUAUGaaGGC-GUGG- -5'
16911 5' -55.2 NC_004313.1 + 923 0.69 0.442562
Target:  5'- -cGGUGCgGaAGUAUACUcCgGCGCCa -3'
miRNA:   3'- caCCGCGgCcUCAUAUGAaGgCGUGG- -5'
16911 5' -55.2 NC_004313.1 + 26983 0.69 0.422877
Target:  5'- -cGGCGUCGGAGU--GCUguaCUGCAgCu -3'
miRNA:   3'- caCCGCGGCCUCAuaUGAa--GGCGUgG- -5'
16911 5' -55.2 NC_004313.1 + 27797 0.71 0.324666
Target:  5'- -cGGCGUCGGAGUGUAaauaCCGUagggguuguACCg -3'
miRNA:   3'- caCCGCGGCCUCAUAUgaa-GGCG---------UGG- -5'
16911 5' -55.2 NC_004313.1 + 989 1.13 0.000365
Target:  5'- cGUGGCGCCGGAGUAUACUUCCGCACCg -3'
miRNA:   3'- -CACCGCGGCCUCAUAUGAAGGCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.