miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16912 5' -54.4 NC_004313.1 + 2265 0.66 0.668528
Target:  5'- -cUCGCG-CCucugguGGGCGUGCugGGUGCg -3'
miRNA:   3'- ucGGUGCuGGu-----CUUGUACGugUCGCG- -5'
16912 5' -54.4 NC_004313.1 + 3748 0.66 0.657154
Target:  5'- cAGCCACGAugaUguGGugAUGUcCGGgGCa -3'
miRNA:   3'- -UCGGUGCU---GguCUugUACGuGUCgCG- -5'
16912 5' -54.4 NC_004313.1 + 32934 0.66 0.657154
Target:  5'- cAGCCACuacggcGCCAGAGCAaGaagaacccauUAUAGCGCc -3'
miRNA:   3'- -UCGGUGc-----UGGUCUUGUaC----------GUGUCGCG- -5'
16912 5' -54.4 NC_004313.1 + 34267 0.66 0.644614
Target:  5'- uAGCCGucauCCGGAuacCAUGCuguuuuaACAGCGCg -3'
miRNA:   3'- -UCGGUgcu-GGUCUu--GUACG-------UGUCGCG- -5'
16912 5' -54.4 NC_004313.1 + 12748 0.67 0.600137
Target:  5'- cAGCCGCcAUCAGGACAacagccaucaGCACAGcCGUc -3'
miRNA:   3'- -UCGGUGcUGGUCUUGUa---------CGUGUC-GCG- -5'
16912 5' -54.4 NC_004313.1 + 35585 0.67 0.577462
Target:  5'- cGGCC-UGAauuuucCCAGccAGCucuUGCGCGGCGCg -3'
miRNA:   3'- -UCGGuGCU------GGUC--UUGu--ACGUGUCGCG- -5'
16912 5' -54.4 NC_004313.1 + 27199 0.67 0.566192
Target:  5'- uGCCgGCGugUucauGAACAaaaUGCGgCAGCGCu -3'
miRNA:   3'- uCGG-UGCugGu---CUUGU---ACGU-GUCGCG- -5'
16912 5' -54.4 NC_004313.1 + 34511 0.67 0.562822
Target:  5'- aGGCCGgGAUCGGAACugaugccccuguuuAUGCAgGGgCGUg -3'
miRNA:   3'- -UCGGUgCUGGUCUUG--------------UACGUgUC-GCG- -5'
16912 5' -54.4 NC_004313.1 + 8 0.68 0.55498
Target:  5'- uGCCGCauauGGCUGGAACG-GCGgGGCGUu -3'
miRNA:   3'- uCGGUG----CUGGUCUUGUaCGUgUCGCG- -5'
16912 5' -54.4 NC_004313.1 + 11478 0.68 0.543835
Target:  5'- aAGCCGucCGGCCAGcagGACGgacUGCuGCAGgGCa -3'
miRNA:   3'- -UCGGU--GCUGGUC---UUGU---ACG-UGUCgCG- -5'
16912 5' -54.4 NC_004313.1 + 30819 0.69 0.447691
Target:  5'- uGCCcuCGuCCAGGACAgugGUACAGCa- -3'
miRNA:   3'- uCGGu-GCuGGUCUUGUa--CGUGUCGcg -5'
16912 5' -54.4 NC_004313.1 + 12857 0.7 0.425626
Target:  5'- aGGCCGUGACuCAGAcauuaucacuguCAUGCACccGGCGCu -3'
miRNA:   3'- -UCGGUGCUG-GUCUu-----------GUACGUG--UCGCG- -5'
16912 5' -54.4 NC_004313.1 + 34037 0.7 0.389087
Target:  5'- cAGCCAU-ACCAGAAgAUGUuugUGGCGCa -3'
miRNA:   3'- -UCGGUGcUGGUCUUgUACGu--GUCGCG- -5'
16912 5' -54.4 NC_004313.1 + 18813 0.71 0.379819
Target:  5'- cGCCACGGCaaucauCAGGGCAgucaGCAGCGUc -3'
miRNA:   3'- uCGGUGCUG------GUCUUGUacg-UGUCGCG- -5'
16912 5' -54.4 NC_004313.1 + 7641 0.71 0.379819
Target:  5'- cGCCGCGagGCCGcuGGugAUGUcCGGCGCa -3'
miRNA:   3'- uCGGUGC--UGGU--CUugUACGuGUCGCG- -5'
16912 5' -54.4 NC_004313.1 + 29633 0.74 0.239128
Target:  5'- cGCCACGGcgcCCGGAGC-UGCACAcuCGCg -3'
miRNA:   3'- uCGGUGCU---GGUCUUGuACGUGUc-GCG- -5'
16912 5' -54.4 NC_004313.1 + 2420 1.11 0.000534
Target:  5'- cAGCCACGACCAGAACAUGCACAGCGCc -3'
miRNA:   3'- -UCGGUGCUGGUCUUGUACGUGUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.