miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16913 3' -57.8 NC_004313.1 + 11217 0.66 0.488837
Target:  5'- aGUCGCCau-UGCGgCGC--UGGUGGCc -3'
miRNA:   3'- -CGGCGGacuACGCgGCGcuACUACCG- -5'
16913 3' -57.8 NC_004313.1 + 36975 0.67 0.418438
Target:  5'- gGCCGCCaaacagcagccugUGAaugGuUGCCGCGc-GGUGGCg -3'
miRNA:   3'- -CGGCGG-------------ACUa--C-GCGGCGCuaCUACCG- -5'
16913 3' -57.8 NC_004313.1 + 8079 0.67 0.400663
Target:  5'- aCCaGCggUGAUGaCGCUGCGgcGGUGGCu -3'
miRNA:   3'- cGG-CGg-ACUAC-GCGGCGCuaCUACCG- -5'
16913 3' -57.8 NC_004313.1 + 15430 0.68 0.391504
Target:  5'- uGCUGCCUGAUaUG-UGUGAUGAggacUGGCu -3'
miRNA:   3'- -CGGCGGACUAcGCgGCGCUACU----ACCG- -5'
16913 3' -57.8 NC_004313.1 + 6572 0.68 0.372719
Target:  5'- -aUGCgUGAUGCGCgGCGAcuggucaUGAaacgUGGCc -3'
miRNA:   3'- cgGCGgACUACGCGgCGCU-------ACU----ACCG- -5'
16913 3' -57.8 NC_004313.1 + 5215 0.68 0.361401
Target:  5'- -gCGCCgguacGAUGCGCCuuacgcaGCGuguaaaucagcuuaAUGAUGGCa -3'
miRNA:   3'- cgGCGGa----CUACGCGG-------CGC--------------UACUACCG- -5'
16913 3' -57.8 NC_004313.1 + 11793 0.69 0.339492
Target:  5'- uUCGC----UGCGCUGCGuUGAUGGCg -3'
miRNA:   3'- cGGCGgacuACGCGGCGCuACUACCG- -5'
16913 3' -57.8 NC_004313.1 + 15627 0.69 0.331325
Target:  5'- gGCgGCCUGuuacGUGUGCCGguuauugcUGAUG-UGGCg -3'
miRNA:   3'- -CGgCGGAC----UACGCGGC--------GCUACuACCG- -5'
16913 3' -57.8 NC_004313.1 + 35501 0.71 0.244618
Target:  5'- aGCCG-CUGccGCGCCGCGcaaGAgcUGGCu -3'
miRNA:   3'- -CGGCgGACuaCGCGGCGCua-CU--ACCG- -5'
16913 3' -57.8 NC_004313.1 + 18751 0.72 0.214445
Target:  5'- aCUGcCCUGAUGauuGCCGUGgcGAUGGUa -3'
miRNA:   3'- cGGC-GGACUACg--CGGCGCuaCUACCG- -5'
16913 3' -57.8 NC_004313.1 + 36106 0.72 0.203298
Target:  5'- aGCCauGCUUGGcaaagcUGCGCCGCGAUGGcaGCg -3'
miRNA:   3'- -CGG--CGGACU------ACGCGGCGCUACUacCG- -5'
16913 3' -57.8 NC_004313.1 + 6887 1.12 0.000225
Target:  5'- uGCCGCCUGAUGCGCCGCGAUGAUGGCc -3'
miRNA:   3'- -CGGCGGACUACGCGGCGCUACUACCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.