miRNA display CGI

Results 1 - 8 of 8 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
16913	5'	-56.2	NC_004313.1	+	1801	0.66	0.588482
	Target:  5'- aCGUUCCgcaguACGGCGAuccucauuuuucucaACACUGUAGAc- -3' miRNA:   3'- aGCGGGG-----UGCCGCU---------------UGUGGCAUCUug -5'
16913	5'	-56.2	NC_004313.1	+	8092	0.67	0.508062
	Target:  5'- aCGCU--GCGGCGGugGCUGU-GAGCa -3' miRNA:   3'- aGCGGggUGCCGCUugUGGCAuCUUG- -5'
16913	5'	-56.2	NC_004313.1	+	44	0.68	0.456422
	Target:  5'- gUCGCCCCaagccuACGGCGcGCaaggagcugGCCG-GGAACc -3' miRNA:   3'- -AGCGGGG------UGCCGCuUG---------UGGCaUCUUG- -5'
16913	5'	-56.2	NC_004313.1	+	27809	0.71	0.320752
	Target:  5'- cCGUuuaaCCCACGGCGucggaguguaAAUACCGUAGGGg -3' miRNA:   3'- aGCG----GGGUGCCGC----------UUGUGGCAUCUUg -5'
16913	5'	-56.2	NC_004313.1	+	4795	0.72	0.248423
	Target:  5'- cCG-CCCACGGUGAuCACCGUGGc-- -3' miRNA:   3'- aGCgGGGUGCCGCUuGUGGCAUCuug -5'
16913	5'	-56.2	NC_004313.1	+	4724	0.74	0.190119
	Target:  5'- gCGCCaggaggCCACGGUGAuCACCGUGGGc- -3' miRNA:   3'- aGCGG------GGUGCCGCUuGUGGCAUCUug -5'
16913	5'	-56.2	NC_004313.1	+	6782	0.75	0.180005
	Target:  5'- cUGUUCUACGGUGuuCGCCGUGGGGCg -3' miRNA:   3'- aGCGGGGUGCCGCuuGUGGCAUCUUG- -5'
16913	5'	-56.2	NC_004313.1	+	6849	1.11	0.000433
	Target:  5'- uUCGCCCCACGGCGAACACCGUAGAACa -3' miRNA:   3'- -AGCGGGGUGCCGCUUGUGGCAUCUUG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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