miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16913 5' -56.2 NC_004313.1 + 1801 0.66 0.588482
Target:  5'- aCGUUCCgcaguACGGCGAuccucauuuuucucaACACUGUAGAc- -3'
miRNA:   3'- aGCGGGG-----UGCCGCU---------------UGUGGCAUCUug -5'
16913 5' -56.2 NC_004313.1 + 8092 0.67 0.508062
Target:  5'- aCGCU--GCGGCGGugGCUGU-GAGCa -3'
miRNA:   3'- aGCGGggUGCCGCUugUGGCAuCUUG- -5'
16913 5' -56.2 NC_004313.1 + 44 0.68 0.456422
Target:  5'- gUCGCCCCaagccuACGGCGcGCaaggagcugGCCG-GGAACc -3'
miRNA:   3'- -AGCGGGG------UGCCGCuUG---------UGGCaUCUUG- -5'
16913 5' -56.2 NC_004313.1 + 27809 0.71 0.320752
Target:  5'- cCGUuuaaCCCACGGCGucggaguguaAAUACCGUAGGGg -3'
miRNA:   3'- aGCG----GGGUGCCGC----------UUGUGGCAUCUUg -5'
16913 5' -56.2 NC_004313.1 + 4795 0.72 0.248423
Target:  5'- cCG-CCCACGGUGAuCACCGUGGc-- -3'
miRNA:   3'- aGCgGGGUGCCGCUuGUGGCAUCuug -5'
16913 5' -56.2 NC_004313.1 + 4724 0.74 0.190119
Target:  5'- gCGCCaggaggCCACGGUGAuCACCGUGGGc- -3'
miRNA:   3'- aGCGG------GGUGCCGCUuGUGGCAUCUug -5'
16913 5' -56.2 NC_004313.1 + 6782 0.75 0.180005
Target:  5'- cUGUUCUACGGUGuuCGCCGUGGGGCg -3'
miRNA:   3'- aGCGGGGUGCCGCuuGUGGCAUCUUG- -5'
16913 5' -56.2 NC_004313.1 + 6849 1.11 0.000433
Target:  5'- uUCGCCCCACGGCGAACACCGUAGAACa -3'
miRNA:   3'- -AGCGGGGUGCCGCUUGUGGCAUCUUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.