miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16916 3' -49 NC_004313.1 + 5841 0.66 0.93167
Target:  5'- uACC-UGCAACUGCUGGcCAgAGCg-- -3'
miRNA:   3'- -UGGuAUGUUGACGGCCuGUaUUGagg -5'
16916 3' -49 NC_004313.1 + 13145 0.66 0.93167
Target:  5'- aGCCugGUAUGACgacGCCGGGCGggaaucUGACaUCCu -3'
miRNA:   3'- -UGG--UAUGUUGa--CGGCCUGU------AUUG-AGG- -5'
16916 3' -49 NC_004313.1 + 29978 0.66 0.91263
Target:  5'- cUCAUaaaGCGGgUGCCGGGCGUGgaaAC-CCg -3'
miRNA:   3'- uGGUA---UGUUgACGGCCUGUAU---UGaGG- -5'
16916 3' -49 NC_004313.1 + 35217 0.67 0.905654
Target:  5'- aGCCGUGCGccuGCUGCgGGaaGCAggcgGAUgaUCCg -3'
miRNA:   3'- -UGGUAUGU---UGACGgCC--UGUa---UUG--AGG- -5'
16916 3' -49 NC_004313.1 + 38790 0.67 0.882877
Target:  5'- cGCCAUuuGCAACUGCUGcuGCAUGAagaUCg -3'
miRNA:   3'- -UGGUA--UGUUGACGGCc-UGUAUUg--AGg -5'
16916 3' -49 NC_004313.1 + 4592 0.67 0.874688
Target:  5'- aGCCAccuuguuuUGCGcuccACgUGCCGGACGUuucAGCUCa -3'
miRNA:   3'- -UGGU--------AUGU----UG-ACGGCCUGUA---UUGAGg -5'
16916 3' -49 NC_004313.1 + 12945 0.68 0.866211
Target:  5'- cACCAUcCAGC-GCCGGguGCAUGACa-- -3'
miRNA:   3'- -UGGUAuGUUGaCGGCC--UGUAUUGagg -5'
16916 3' -49 NC_004313.1 + 11403 0.68 0.852071
Target:  5'- uGCCcUGCAGCaguccguccugcugGCCGGACGgcuUUCCg -3'
miRNA:   3'- -UGGuAUGUUGa-------------CGGCCUGUauuGAGG- -5'
16916 3' -49 NC_004313.1 + 2554 0.68 0.829607
Target:  5'- gGCCAUGCGACUGaCGG-CGguuuuUUCCu -3'
miRNA:   3'- -UGGUAUGUUGACgGCCuGUauu--GAGG- -5'
16916 3' -49 NC_004313.1 + 10605 0.68 0.829607
Target:  5'- cCCAUcgcgGCAAUUucGCCGGAUGccACUCCg -3'
miRNA:   3'- uGGUA----UGUUGA--CGGCCUGUauUGAGG- -5'
16916 3' -49 NC_004313.1 + 15012 0.69 0.819834
Target:  5'- aGCCGUAUGGCUGUgGGGuccuguCAUcccGCUCCg -3'
miRNA:   3'- -UGGUAUGUUGACGgCCU------GUAu--UGAGG- -5'
16916 3' -49 NC_004313.1 + 10741 0.69 0.789208
Target:  5'- gGCCAUGCugaAGgUGCUGGACuc-GCUCg -3'
miRNA:   3'- -UGGUAUG---UUgACGGCCUGuauUGAGg -5'
16916 3' -49 NC_004313.1 + 21845 0.71 0.700314
Target:  5'- uCCAUAUAAC-GCCGGAUAUGuucugGCUUUa -3'
miRNA:   3'- uGGUAUGUUGaCGGCCUGUAU-----UGAGG- -5'
16916 3' -49 NC_004313.1 + 14372 0.71 0.688714
Target:  5'- uGCCA---GACUGCCGGACugaAACUUa -3'
miRNA:   3'- -UGGUaugUUGACGGCCUGua-UUGAGg -5'
16916 3' -49 NC_004313.1 + 8508 1.14 0.0014
Target:  5'- gACCAUACAACUGCCGGACAUAACUCCa -3'
miRNA:   3'- -UGGUAUGUUGACGGCCUGUAUUGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.