miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16918 3' -52.3 NC_004313.1 + 27047 0.66 0.787833
Target:  5'- gCUGCAguacagcacUCcGA-CGCCGCGcGGUAAaGCg -3'
miRNA:   3'- -GACGU---------AGuUUaGCGGCGC-CCGUUaCG- -5'
16918 3' -52.3 NC_004313.1 + 33614 0.66 0.777397
Target:  5'- -gGUAUCGAAguUCGCCGCgacguucauGGGCGcuauUGUc -3'
miRNA:   3'- gaCGUAGUUU--AGCGGCG---------CCCGUu---ACG- -5'
16918 3' -52.3 NC_004313.1 + 3048 0.67 0.73412
Target:  5'- gCUGCcgCcagcgauAUUGCCucGCGGGCAuagGCg -3'
miRNA:   3'- -GACGuaGuu-----UAGCGG--CGCCCGUua-CG- -5'
16918 3' -52.3 NC_004313.1 + 10260 0.67 0.722985
Target:  5'- uUGCAg-AGAUCgugGCgGCGGGCGGgcagGCa -3'
miRNA:   3'- gACGUagUUUAG---CGgCGCCCGUUa---CG- -5'
16918 3' -52.3 NC_004313.1 + 13670 0.67 0.722985
Target:  5'- cCUGCAUCAAcaacGUCcacaCCGaauggcCGGGCAaGUGCg -3'
miRNA:   3'- -GACGUAGUU----UAGc---GGC------GCCCGU-UACG- -5'
16918 3' -52.3 NC_004313.1 + 22790 0.67 0.711749
Target:  5'- aCUGCAUCAGcgCaaauaGCCGCucgcgcuuccGGGCuuUGUc -3'
miRNA:   3'- -GACGUAGUUuaG-----CGGCG----------CCCGuuACG- -5'
16918 3' -52.3 NC_004313.1 + 10964 0.67 0.700427
Target:  5'- uCUGCAUCGAGcCGCCauauuccUGGGCAucaGCc -3'
miRNA:   3'- -GACGUAGUUUaGCGGc------GCCCGUua-CG- -5'
16918 3' -52.3 NC_004313.1 + 21430 0.67 0.700427
Target:  5'- -gGCG-CGAAagGCUGCGGGgGAUGa -3'
miRNA:   3'- gaCGUaGUUUagCGGCGCCCgUUACg -5'
16918 3' -52.3 NC_004313.1 + 17340 0.68 0.6314
Target:  5'- gCUGguUCaAAAUCGCCaCGGuuGUAAUGCc -3'
miRNA:   3'- -GACguAG-UUUAGCGGcGCC--CGUUACG- -5'
16918 3' -52.3 NC_004313.1 + 5494 0.68 0.6314
Target:  5'- gCUGCugaAAAUCGCUGCGGcGUAAUc- -3'
miRNA:   3'- -GACGuagUUUAGCGGCGCC-CGUUAcg -5'
16918 3' -52.3 NC_004313.1 + 30700 0.69 0.573768
Target:  5'- -cGCAUCAAugaCGCUGUGGcGCu-UGCg -3'
miRNA:   3'- gaCGUAGUUua-GCGGCGCC-CGuuACG- -5'
16918 3' -52.3 NC_004313.1 + 32900 0.71 0.474014
Target:  5'- aCUG-GUCGAAuUUGCCGCGGGUAagGUu -3'
miRNA:   3'- -GACgUAGUUU-AGCGGCGCCCGUuaCG- -5'
16918 3' -52.3 NC_004313.1 + 25990 0.73 0.365254
Target:  5'- uCUGCAUUAAAUccccggCGCCGCGGGgAuuuauugaaGUGUa -3'
miRNA:   3'- -GACGUAGUUUA------GCGGCGCCCgU---------UACG- -5'
16918 3' -52.3 NC_004313.1 + 10358 1.12 0.000765
Target:  5'- aCUGCAUCAAAUCGCCGCGGGCAAUGCc -3'
miRNA:   3'- -GACGUAGUUUAGCGGCGCCCGUUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.