miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16920 5' -60.7 NC_004313.1 + 23601 0.66 0.325117
Target:  5'- cGGC-GCUGGCGGUGCUGUGuaGAGCg -3'
miRNA:   3'- -UUGuCGGUCGUCGCGGCGCggCUUGa -5'
16920 5' -60.7 NC_004313.1 + 22526 0.66 0.309403
Target:  5'- -uCAGCCAGC-GCGuuGUGCauaucgccuuCGAACg -3'
miRNA:   3'- uuGUCGGUCGuCGCggCGCG----------GCUUGa -5'
16920 5' -60.7 NC_004313.1 + 4595 0.67 0.25899
Target:  5'- uGCAGCCAccuuGUuuuGCGCuccaCGUGCCGGACg -3'
miRNA:   3'- uUGUCGGU----CGu--CGCG----GCGCGGCUUGa -5'
16920 5' -60.7 NC_004313.1 + 34239 0.67 0.252362
Target:  5'- uAACAGCgCGcuCAGUGCCaGCGUCGGGCg -3'
miRNA:   3'- -UUGUCG-GUc-GUCGCGG-CGCGGCUUGa -5'
16920 5' -60.7 NC_004313.1 + 35500 0.69 0.198844
Target:  5'- --aAGCCGcuGCcGCGCCGCGCaaGAGCUg -3'
miRNA:   3'- uugUCGGU--CGuCGCGGCGCGg-CUUGA- -5'
16920 5' -60.7 NC_004313.1 + 13629 0.69 0.18838
Target:  5'- aGGCGcGCCGGCAGcCGCCGUuauugaggcucaGCCGGAa- -3'
miRNA:   3'- -UUGU-CGGUCGUC-GCGGCG------------CGGCUUga -5'
16920 5' -60.7 NC_004313.1 + 11282 0.69 0.182833
Target:  5'- -cCGGCCAcCAGCGCCGCaauggcgacuuucGCCGGAg- -3'
miRNA:   3'- uuGUCGGUcGUCGCGGCG-------------CGGCUUga -5'
16920 5' -60.7 NC_004313.1 + 38277 0.71 0.131532
Target:  5'- cGACGGCCAGCGGCGacaucaUCGCGCaaAGCa -3'
miRNA:   3'- -UUGUCGGUCGUCGC------GGCGCGgcUUGa -5'
16920 5' -60.7 NC_004313.1 + 35571 0.71 0.131532
Target:  5'- -cCAGCCAGCucuuGCGCgGCGCgGcAGCg -3'
miRNA:   3'- uuGUCGGUCGu---CGCGgCGCGgC-UUGa -5'
16920 5' -60.7 NC_004313.1 + 10169 0.72 0.117501
Target:  5'- cGCAGCauucacgGGCAGCGCCaGCGCCccaaGAACa -3'
miRNA:   3'- uUGUCGg------UCGUCGCGG-CGCGG----CUUGa -5'
16920 5' -60.7 NC_004313.1 + 11186 1.04 0.000328
Target:  5'- cAACAGCCAGCAGCGCCGCGCCGAACUu -3'
miRNA:   3'- -UUGUCGGUCGUCGCGGCGCGGCUUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.