miRNA display CGI


Results 1 - 9 of 9 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16926 5' -48.9 NC_004313.1 + 2733 0.66 0.933821
Target:  5'- aGCUGguggUCACCug--UCUGUGCCUGc -3'
miRNA:   3'- gCGAUa---AGUGGuuuuGGACGUGGACu -5'
16926 5' -48.9 NC_004313.1 + 32604 0.66 0.927858
Target:  5'- gGCUAUaggguggaUUACCGAAugCgGCACCg-- -3'
miRNA:   3'- gCGAUA--------AGUGGUUUugGaCGUGGacu -5'
16926 5' -48.9 NC_004313.1 + 23777 0.66 0.914966
Target:  5'- gCGCUGgcaUCGCUGGAugCUGagcccgugcgaUACCUGAa -3'
miRNA:   3'- -GCGAUa--AGUGGUUUugGAC-----------GUGGACU- -5'
16926 5' -48.9 NC_004313.1 + 5234 0.67 0.893239
Target:  5'- uGUUGUUCAUCAuGACUUcGCGCCg-- -3'
miRNA:   3'- gCGAUAAGUGGUuUUGGA-CGUGGacu -5'
16926 5' -48.9 NC_004313.1 + 13532 0.68 0.841683
Target:  5'- uCGaCUGUUCugCGucGCCUGCACa--- -3'
miRNA:   3'- -GC-GAUAAGugGUuuUGGACGUGgacu -5'
16926 5' -48.9 NC_004313.1 + 19728 0.68 0.841683
Target:  5'- gGCU----GCCAucACCUGCaACCUGGa -3'
miRNA:   3'- gCGAuaagUGGUuuUGGACG-UGGACU- -5'
16926 5' -48.9 NC_004313.1 + 13782 0.68 0.822341
Target:  5'- cCGUUcgUCGUCAuauGCCaGCGCCUGAg -3'
miRNA:   3'- -GCGAuaAGUGGUuu-UGGaCGUGGACU- -5'
16926 5' -48.9 NC_004313.1 + 34662 0.7 0.759149
Target:  5'- gGCUGUgauacCGCCGGGACC-GCGCCg-- -3'
miRNA:   3'- gCGAUAa----GUGGUUUUGGaCGUGGacu -5'
16926 5' -48.9 NC_004313.1 + 24478 1.11 0.00223
Target:  5'- gCGCUAUUCACCAAAACCUGCACCUGAa -3'
miRNA:   3'- -GCGAUAAGUGGUUUUGGACGUGGACU- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.