Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 16926 | 5' | -48.9 | NC_004313.1 | + | 2733 | 0.66 | 0.933821 |
|
Target: 5'- aGCUGguggUCACCug--UCUGUGCCUGc -3' miRNA: 3'- gCGAUa---AGUGGuuuuGGACGUGGACu -5' |
|||||||
| 16926 | 5' | -48.9 | NC_004313.1 | + | 32604 | 0.66 | 0.927858 |
|
Target: 5'- gGCUAUaggguggaUUACCGAAugCgGCACCg-- -3' miRNA: 3'- gCGAUA--------AGUGGUUUugGaCGUGGacu -5' |
|||||||
| 16926 | 5' | -48.9 | NC_004313.1 | + | 23777 | 0.66 | 0.914966 |
|
Target: 5'- gCGCUGgcaUCGCUGGAugCUGagcccgugcgaUACCUGAa -3' miRNA: 3'- -GCGAUa--AGUGGUUUugGAC-----------GUGGACU- -5' |
|||||||
| 16926 | 5' | -48.9 | NC_004313.1 | + | 5234 | 0.67 | 0.893239 |
|
Target: 5'- uGUUGUUCAUCAuGACUUcGCGCCg-- -3' miRNA: 3'- gCGAUAAGUGGUuUUGGA-CGUGGacu -5' |
|||||||
| 16926 | 5' | -48.9 | NC_004313.1 | + | 13532 | 0.68 | 0.841683 |
|
Target: 5'- uCGaCUGUUCugCGucGCCUGCACa--- -3' miRNA: 3'- -GC-GAUAAGugGUuuUGGACGUGgacu -5' |
|||||||
| 16926 | 5' | -48.9 | NC_004313.1 | + | 19728 | 0.68 | 0.841683 |
|
Target: 5'- gGCU----GCCAucACCUGCaACCUGGa -3' miRNA: 3'- gCGAuaagUGGUuuUGGACG-UGGACU- -5' |
|||||||
| 16926 | 5' | -48.9 | NC_004313.1 | + | 13782 | 0.68 | 0.822341 |
|
Target: 5'- cCGUUcgUCGUCAuauGCCaGCGCCUGAg -3' miRNA: 3'- -GCGAuaAGUGGUuu-UGGaCGUGGACU- -5' |
|||||||
| 16926 | 5' | -48.9 | NC_004313.1 | + | 34662 | 0.7 | 0.759149 |
|
Target: 5'- gGCUGUgauacCGCCGGGACC-GCGCCg-- -3' miRNA: 3'- gCGAUAa----GUGGUUUUGGaCGUGGacu -5' |
|||||||
| 16926 | 5' | -48.9 | NC_004313.1 | + | 24478 | 1.11 | 0.00223 |
|
Target: 5'- gCGCUAUUCACCAAAACCUGCACCUGAa -3' miRNA: 3'- -GCGAUAAGUGGUUUUGGACGUGGACU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home