miRNA: 3'- aagaCCGCGCGUUUUUUGAgacauau -5'
miRNA: 3'- -AAGACCGCGCGuuuUUUGagaCAUAu -5'
miRNA: 3'- aaGACCGCGCGUUUUUUgAGac--AUAU- -5'
miRNA: 3'- -AAGACCGCGCGUUUUUUGAGACAUAU- -5'
Results 1 - 4 of 4 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 16930 | 5' | -47.4 | NC_004313.1 | + | 59 | 0.67 | 0.910565 |
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Target: 5'- ---cGGCGCGCAAGGAGCUg------ -3' miRNA: 3'- aagaCCGCGCGUUUUUUGAgacauau -5' |
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| 16930 | 5' | -47.4 | NC_004313.1 | + | 32200 | 0.7 | 0.801546 |
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Target: 5'- uUUCUGGCGCGCcguGAACg--GUGUu -3' miRNA: 3'- -AAGACCGCGCGuuuUUUGagaCAUAu -5' |
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| 16930 | 5' | -47.4 | NC_004313.1 | + | 14554 | 0.71 | 0.733822 |
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Target: 5'- -gCUGGCGCGCGGGGAAgUCgcgcUAUAu -3' miRNA: 3'- aaGACCGCGCGUUUUUUgAGac--AUAU- -5' |
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| 16930 | 5' | -47.4 | NC_004313.1 | + | 29592 | 1.05 | 0.006105 |
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Target: 5'- uUUCUGGCGCGCAAAAAACUCUGUAUAc -3' miRNA: 3'- -AAGACCGCGCGUUUUUUGAGACAUAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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