miRNA display CGI

Results 1 - 8 of 8 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
16932	5'	-42.4	NC_004313.1	+	39209	0.66	0.99949
	Target:  5'- -uGCCGGGUAAauac--AUUUGCACUu -3' miRNA:   3'- cgUGGUCCAUUacuuaaUAAACGUGA- -5'
16932	5'	-42.4	NC_004313.1	+	22261	0.67	0.99916
	Target:  5'- uGUACCAGGc-AUGAAU--UUUGaCGCUa -3' miRNA:   3'- -CGUGGUCCauUACUUAauAAAC-GUGA- -5'
16932	5'	-42.4	NC_004313.1	+	19670	0.68	0.997461
	Target:  5'- gGUugCAGGUGAUGGcagccaUGUUUGCcCg -3' miRNA:   3'- -CGugGUCCAUUACUua----AUAAACGuGa -5'
16932	5'	-42.4	NC_004313.1	+	29335	0.68	0.9969
	Target:  5'- uGUGCCAGGUGAUaGGUUccuccgGCACg -3' miRNA:   3'- -CGUGGUCCAUUAcUUAAuaaa--CGUGa -5'
16932	5'	-42.4	NC_004313.1	+	22209	0.69	0.993542
	Target:  5'- uGCGCCcGGUAAUGAGUgga-UGC-Ca -3' miRNA:   3'- -CGUGGuCCAUUACUUAauaaACGuGa -5'
16932	5'	-42.4	NC_004313.1	+	31315	0.71	0.978559
	Target:  5'- uCACUAGGUAGUGcaggagUUGCACc -3' miRNA:   3'- cGUGGUCCAUUACuuaauaAACGUGa -5'
16932	5'	-42.4	NC_004313.1	+	32247	0.74	0.922387
	Target:  5'- uGCAUCAGGUAGUGAGUg----GUAUc -3' miRNA:   3'- -CGUGGUCCAUUACUUAauaaaCGUGa -5'
16932	5'	-42.4	NC_004313.1	+	31347	1.12	0.010713
	Target:  5'- uGCACCAGGUAAUGAAUUAUUUGCACUc -3' miRNA:   3'- -CGUGGUCCAUUACUUAAUAAACGUGA- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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