miRNA display CGI

Results 1 - 8 of 8 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
16933	3'	-48.9	NC_004313.1	+	5325	0.66	0.943549
	Target:  5'- uCGCCGCCGAUgcGAaagCCAuuGCGUUUg- -3' miRNA:   3'- -GUGGCGGCUAa-CUaa-GGU--CGUAAAgg -5'
16933	3'	-48.9	NC_004313.1	+	7649	0.67	0.913654
	Target:  5'- gGCCGCUGGU-GAUgUCCGGCGc---- -3' miRNA:   3'- gUGGCGGCUAaCUA-AGGUCGUaaagg -5'
16933	3'	-48.9	NC_004313.1	+	32769	0.67	0.913654
	Target:  5'- gACCGCgGAUaaacaUGAUgugaUCGGCGUcUUCCg -3' miRNA:   3'- gUGGCGgCUA-----ACUAa---GGUCGUA-AAGG- -5'
16933	3'	-48.9	NC_004313.1	+	17741	0.67	0.90673
	Target:  5'- gACCGCUGGUUGAguuucCCGGCu----- -3' miRNA:   3'- gUGGCGGCUAACUaa---GGUCGuaaagg -5'
16933	3'	-48.9	NC_004313.1	+	12458	0.67	0.897264
	Target:  5'- uGuuGCCGAUgcuuucaggaugguUGAcUCCGGCGUgUCUg -3' miRNA:   3'- gUggCGGCUA--------------ACUaAGGUCGUAaAGG- -5'
16933	3'	-48.9	NC_004313.1	+	34907	0.71	0.702244
	Target:  5'- cCACaGCU-AUUGAUUUCAGCcgUUCCg -3' miRNA:   3'- -GUGgCGGcUAACUAAGGUCGuaAAGG- -5'
16933	3'	-48.9	NC_004313.1	+	7795	0.73	0.5851
	Target:  5'- uCACUGCUGAUUGGUcacgCCAGCAa---- -3' miRNA:   3'- -GUGGCGGCUAACUAa---GGUCGUaaagg -5'
16933	3'	-48.9	NC_004313.1	+	32578	1.14	0.001508
	Target:  5'- gCACCGCCGAUUGAUUCCAGCAUUUCCg -3' miRNA:   3'- -GUGGCGGCUAACUAAGGUCGUAAAGG- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home