Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 16936 | 5' | -61.5 | NC_004313.1 | + | 11291 | 0.66 | 0.329278 |
|
Target: 5'- -aGcAUAgCGCCGGccACCaGCGCCGCAa -3' miRNA: 3'- caC-UAUgGCGGCCc-UGG-CGCGGCGUc -5' |
|||||||
| 16936 | 5' | -61.5 | NC_004313.1 | + | 16970 | 0.67 | 0.277624 |
|
Target: 5'- gGUGAUcCCGCCacGGGccGCCGCGCaaCGGa -3' miRNA: 3'- -CACUAuGGCGG--CCC--UGGCGCGgcGUC- -5' |
|||||||
| 16936 | 5' | -61.5 | NC_004313.1 | + | 6444 | 0.68 | 0.23264 |
|
Target: 5'- -gGGUACCGauaaCGGGAgUGacuauGCCGCAGa -3' miRNA: 3'- caCUAUGGCg---GCCCUgGCg----CGGCGUC- -5' |
|||||||
| 16936 | 5' | -61.5 | NC_004313.1 | + | 2462 | 0.68 | 0.226739 |
|
Target: 5'- aGUGAcg-CGCCGGuGACCaCGCCaGCAGa -3' miRNA: 3'- -CACUaugGCGGCC-CUGGcGCGG-CGUC- -5' |
|||||||
| 16936 | 5' | -61.5 | NC_004313.1 | + | 10074 | 0.68 | 0.226739 |
|
Target: 5'- cUGcUGCUGCCGGGACCGCuguucuuggGgCGCuGg -3' miRNA: 3'- cACuAUGGCGGCCCUGGCG---------CgGCGuC- -5' |
|||||||
| 16936 | 5' | -61.5 | NC_004313.1 | + | 34659 | 1.08 | 0.000193 |
|
Target: 5'- uGUGAUACCGCCGGGACCGCGCCGCAGg -3' miRNA: 3'- -CACUAUGGCGGCCCUGGCGCGGCGUC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home