miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16937 3' -55.1 NC_004313.1 + 37213 0.66 0.612458
Target:  5'- gUGCCgaaaAGUCUGAcaauagccauugGCGGCCACUa--- -3'
miRNA:   3'- -ACGG----UCAGACUua----------CGCCGGUGAcugu -5'
16937 3' -55.1 NC_004313.1 + 15642 0.66 0.610174
Target:  5'- gUGCCGGUUauUGcuGAUGUGGCgggaacugccgguaaUACUGACGa -3'
miRNA:   3'- -ACGGUCAG--AC--UUACGCCG---------------GUGACUGU- -5'
16937 3' -55.1 NC_004313.1 + 16571 0.66 0.59421
Target:  5'- cGCCAGcaacggCUGGAUGCaaaGGCaaauguuGCUGGCGg -3'
miRNA:   3'- aCGGUCa-----GACUUACG---CCGg------UGACUGU- -5'
16937 3' -55.1 NC_004313.1 + 13298 0.66 0.560265
Target:  5'- cGUCAGUacgGAuaaGUGCGGgCAUUGACc -3'
miRNA:   3'- aCGGUCAga-CU---UACGCCgGUGACUGu -5'
16937 3' -55.1 NC_004313.1 + 23595 0.68 0.483596
Target:  5'- cGCCAGUCagccgGAA-GCuugGGCUGCUGGCu -3'
miRNA:   3'- aCGGUCAGa----CUUaCG---CCGGUGACUGu -5'
16937 3' -55.1 NC_004313.1 + 2909 0.68 0.451261
Target:  5'- aGCCAGgaggauaUCUGGcAUGUGcGCaCGCUGACGc -3'
miRNA:   3'- aCGGUC-------AGACU-UACGC-CG-GUGACUGU- -5'
16937 3' -55.1 NC_004313.1 + 10456 0.69 0.432038
Target:  5'- cGUCAGUCUGAAcGCuguccGCCACUG-CGc -3'
miRNA:   3'- aCGGUCAGACUUaCGc----CGGUGACuGU- -5'
16937 3' -55.1 NC_004313.1 + 23795 0.71 0.322613
Target:  5'- uUGUUGGUgCUGAA-GCGGgCGCUGGCAu -3'
miRNA:   3'- -ACGGUCA-GACUUaCGCCgGUGACUGU- -5'
16937 3' -55.1 NC_004313.1 + 38372 0.72 0.261935
Target:  5'- cUGCCAGUCUGGG-GCGGgcugcauuauCCACgcgGGCGg -3'
miRNA:   3'- -ACGGUCAGACUUaCGCC----------GGUGa--CUGU- -5'
16937 3' -55.1 NC_004313.1 + 34795 1.09 0.000568
Target:  5'- gUGCCAGUCUGAAUGCGGCCACUGACAg -3'
miRNA:   3'- -ACGGUCAGACUUACGCCGGUGACUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.