miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16940 5' -47.4 NC_004313.1 + 31038 0.66 0.975622
Target:  5'- cUCAUGCaGCACCUccgagaugcuucauGUuuuuGCCGGAAcgaaaGGCa -3'
miRNA:   3'- cAGUAUGcUGUGGA--------------UA----UGGCCUU-----UCG- -5'
16940 5' -47.4 NC_004313.1 + 270 0.66 0.96676
Target:  5'- uGUCGccUACGAguUCUGg--CGGAGAGCa -3'
miRNA:   3'- -CAGU--AUGCUguGGAUaugGCCUUUCG- -5'
16940 5' -47.4 NC_004313.1 + 13774 0.66 0.962963
Target:  5'- cGUCAUAUGccaGCGCCUGaGCCuGuccAAGCa -3'
miRNA:   3'- -CAGUAUGC---UGUGGAUaUGGcCu--UUCG- -5'
16940 5' -47.4 NC_004313.1 + 17554 0.68 0.930281
Target:  5'- aUCAgGCGACACCUAcgauauuuauauuaaUAUCGGccAGUa -3'
miRNA:   3'- cAGUaUGCUGUGGAU---------------AUGGCCuuUCG- -5'
16940 5' -47.4 NC_004313.1 + 34960 0.68 0.927857
Target:  5'- aUgGUACGcaaugACCUGgcagaagucuUACCGGAGAGCg -3'
miRNA:   3'- cAgUAUGCug---UGGAU----------AUGGCCUUUCG- -5'
16940 5' -47.4 NC_004313.1 + 13991 0.68 0.905899
Target:  5'- -----gUGACGCCUGcaucaccaguacucUGCCGGAuAGCa -3'
miRNA:   3'- caguauGCUGUGGAU--------------AUGGCCUuUCG- -5'
16940 5' -47.4 NC_004313.1 + 8635 0.69 0.893238
Target:  5'- aUCcgGCG-CGCCcgacccagACCGGGGAGCu -3'
miRNA:   3'- cAGuaUGCuGUGGaua-----UGGCCUUUCG- -5'
16940 5' -47.4 NC_004313.1 + 16124 0.69 0.885373
Target:  5'- --aGUGCGACugU--UACCGGAAuGCu -3'
miRNA:   3'- cagUAUGCUGugGauAUGGCCUUuCG- -5'
16940 5' -47.4 NC_004313.1 + 16518 0.69 0.877207
Target:  5'- --uGUAUGGCcugccugauuCCUGUgcACCGGAAGGCg -3'
miRNA:   3'- cagUAUGCUGu---------GGAUA--UGGCCUUUCG- -5'
16940 5' -47.4 NC_004313.1 + 16295 0.71 0.791615
Target:  5'- ---cUGgGcCACCUAUACCGGGGAGa -3'
miRNA:   3'- caguAUgCuGUGGAUAUGGCCUUUCg -5'
16940 5' -47.4 NC_004313.1 + 27518 0.72 0.748005
Target:  5'- -gCGUGCaaccuuCGCCagAUACCGGGAGGCa -3'
miRNA:   3'- caGUAUGcu----GUGGa-UAUGGCCUUUCG- -5'
16940 5' -47.4 NC_004313.1 + 7058 0.79 0.387678
Target:  5'- ----aGCGAUACCggagGCCGGAAAGCu -3'
miRNA:   3'- caguaUGCUGUGGaua-UGGCCUUUCG- -5'
16940 5' -47.4 NC_004313.1 + 2511 1.14 0.00223
Target:  5'- uGUCAUACGACACCUAUACCGGAAAGCa -3'
miRNA:   3'- -CAGUAUGCUGUGGAUAUGGCCUUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.