Results 1 - 5 of 5 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16943 | 3' | -60.4 | NC_004313.1 | + | 19 | 0.66 | 0.387089 |
Target: 5'- gCUGGaACGGCGGGGCGUUcCggGCg- -3' miRNA: 3'- gGGCCcUGUCGCCCCGUAGuGa-CGac -5' |
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16943 | 3' | -60.4 | NC_004313.1 | + | 10903 | 0.67 | 0.312032 |
Target: 5'- aUCCaGGuuggucaGCAGCGGGGCaAUCGC-GCUa -3' miRNA: 3'- -GGGcCC-------UGUCGCCCCG-UAGUGaCGAc -5' |
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16943 | 3' | -60.4 | NC_004313.1 | + | 10082 | 0.68 | 0.255619 |
Target: 5'- gCCGGGACcGCuguucuuGGGGCGcuggCGCUGCc- -3' miRNA: 3'- gGGCCCUGuCG-------CCCCGUa---GUGACGac -5' |
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16943 | 3' | -60.4 | NC_004313.1 | + | 1099 | 0.76 | 0.075243 |
Target: 5'- cCCCGGGGa--CGGGGCAUCACcGCa- -3' miRNA: 3'- -GGGCCCUgucGCCCCGUAGUGaCGac -5' |
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16943 | 3' | -60.4 | NC_004313.1 | + | 7777 | 1.1 | 0.000187 |
Target: 5'- gCCCGGGACAGCGGGGCAUCACUGCUGa -3' miRNA: 3'- -GGGCCCUGUCGCCCCGUAGUGACGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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