miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16943 3' -60.4 NC_004313.1 + 19 0.66 0.387089
Target:  5'- gCUGGaACGGCGGGGCGUUcCggGCg- -3'
miRNA:   3'- gGGCCcUGUCGCCCCGUAGuGa-CGac -5'
16943 3' -60.4 NC_004313.1 + 10903 0.67 0.312032
Target:  5'- aUCCaGGuuggucaGCAGCGGGGCaAUCGC-GCUa -3'
miRNA:   3'- -GGGcCC-------UGUCGCCCCG-UAGUGaCGAc -5'
16943 3' -60.4 NC_004313.1 + 10082 0.68 0.255619
Target:  5'- gCCGGGACcGCuguucuuGGGGCGcuggCGCUGCc- -3'
miRNA:   3'- gGGCCCUGuCG-------CCCCGUa---GUGACGac -5'
16943 3' -60.4 NC_004313.1 + 1099 0.76 0.075243
Target:  5'- cCCCGGGGa--CGGGGCAUCACcGCa- -3'
miRNA:   3'- -GGGCCCUgucGCCCCGUAGUGaCGac -5'
16943 3' -60.4 NC_004313.1 + 7777 1.1 0.000187
Target:  5'- gCCCGGGACAGCGGGGCAUCACUGCUGa -3'
miRNA:   3'- -GGGCCCUGUCGCCCCGUAGUGACGAC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.