miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16946 5' -58.4 NC_004313.1 + 16974 0.66 0.443808
Target:  5'- aUCCCGCCA-CGGgcCGCcGCGCAaCGGa -3'
miRNA:   3'- cAGGGCGGUaGUU--GCGuCGCGUcGCU- -5'
16946 5' -58.4 NC_004313.1 + 1182 0.66 0.443808
Target:  5'- -aUUCGUCAaCuauuGCGCAGUGCGGUGAu -3'
miRNA:   3'- caGGGCGGUaGu---UGCGUCGCGUCGCU- -5'
16946 5' -58.4 NC_004313.1 + 16198 0.67 0.386936
Target:  5'- -gCgCGCCAUC-ACGCAGCauCAGCGc -3'
miRNA:   3'- caGgGCGGUAGuUGCGUCGc-GUCGCu -5'
16946 5' -58.4 NC_004313.1 + 32179 0.67 0.360358
Target:  5'- aUCCCGUCGg-AACGUAGCGCcuuucuGGCGc -3'
miRNA:   3'- cAGGGCGGUagUUGCGUCGCG------UCGCu -5'
16946 5' -58.4 NC_004313.1 + 6821 0.68 0.343359
Target:  5'- ----gGCCAUCAuCGCGGCGCaucaGGCGGc -3'
miRNA:   3'- cagggCGGUAGUuGCGUCGCG----UCGCU- -5'
16946 5' -58.4 NC_004313.1 + 8314 0.68 0.343359
Target:  5'- -gUgCGCCAgcucuuaaCGACGCGGUGgCAGCGAu -3'
miRNA:   3'- caGgGCGGUa-------GUUGCGUCGC-GUCGCU- -5'
16946 5' -58.4 NC_004313.1 + 11022 0.7 0.240748
Target:  5'- -gCCCGCCAUUAACGaAGCuGCAgaaGCGGu -3'
miRNA:   3'- caGGGCGGUAGUUGCgUCG-CGU---CGCU- -5'
16946 5' -58.4 NC_004313.1 + 36183 0.72 0.184162
Target:  5'- cGUCgCUGCCAU---CGCGGCGCAGCu- -3'
miRNA:   3'- -CAG-GGCGGUAguuGCGUCGCGUCGcu -5'
16946 5' -58.4 NC_004313.1 + 35574 0.76 0.093799
Target:  5'- uUCCCaGCCAgcUCuuGCGCGGCGCGGCa- -3'
miRNA:   3'- cAGGG-CGGU--AGu-UGCGUCGCGUCGcu -5'
16946 5' -58.4 NC_004313.1 + 39769 0.77 0.074412
Target:  5'- aUCCCGCCAUCAGCGCGGUuaugGUA-CGAa -3'
miRNA:   3'- cAGGGCGGUAGUUGCGUCG----CGUcGCU- -5'
16946 5' -58.4 NC_004313.1 + 11727 1.08 0.000324
Target:  5'- uGUCCCGCCAUCAACGCAGCGCAGCGAa -3'
miRNA:   3'- -CAGGGCGGUAGUUGCGUCGCGUCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.