Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16947 | 3' | -57.5 | NC_004313.1 | + | 1201 | 0.68 | 0.384595 |
Target: 5'- cCGaCAGCCGCUgAUguGGGCAAUAaCCAc -3' miRNA: 3'- -GC-GUCGGCGG-UAguCCUGUUGUcGGU- -5' |
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16947 | 3' | -57.5 | NC_004313.1 | + | 6829 | 0.67 | 0.403104 |
Target: 5'- uCGCGG-CG-CAUCAGGcgGCAGCGGCUg -3' miRNA: 3'- -GCGUCgGCgGUAGUCC--UGUUGUCGGu -5' |
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16947 | 3' | -57.5 | NC_004313.1 | + | 10303 | 0.67 | 0.392854 |
Target: 5'- uGCAauucccuccGCCGCCAUCGGuaacuguGugGACAGCg- -3' miRNA: 3'- gCGU---------CGGCGGUAGUC-------CugUUGUCGgu -5' |
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16947 | 3' | -57.5 | NC_004313.1 | + | 10962 | 0.73 | 0.181639 |
Target: 5'- uGCaucgAGCCGCCAUauuccuGGGCAuCAGCCAc -3' miRNA: 3'- gCG----UCGGCGGUAgu----CCUGUuGUCGGU- -5' |
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16947 | 3' | -57.5 | NC_004313.1 | + | 12437 | 0.67 | 0.393779 |
Target: 5'- uGCAGCCuCCAUgCuGGGCGAUguuGCCGa -3' miRNA: 3'- gCGUCGGcGGUA-GuCCUGUUGu--CGGU- -5' |
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16947 | 3' | -57.5 | NC_004313.1 | + | 12745 | 1.08 | 0.000398 |
Target: 5'- uCGCAGCCGCCAUCAGGACAACAGCCAu -3' miRNA: 3'- -GCGUCGGCGGUAGUCCUGUUGUCGGU- -5' |
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16947 | 3' | -57.5 | NC_004313.1 | + | 12805 | 0.66 | 0.460846 |
Target: 5'- aGCAGCCGCgugauguaccuggUGUcCGGGGCGuaaauCAGCCu -3' miRNA: 3'- gCGUCGGCG-------------GUA-GUCCUGUu----GUCGGu -5' |
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16947 | 3' | -57.5 | NC_004313.1 | + | 13638 | 0.74 | 0.145338 |
Target: 5'- gGCAGCCGCCGUUAuuGaGGCu-CAGCCGg -3' miRNA: 3'- gCGUCGGCGGUAGU--C-CUGuuGUCGGU- -5' |
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16947 | 3' | -57.5 | NC_004313.1 | + | 17493 | 0.7 | 0.285856 |
Target: 5'- uCGCugauuGCCGCCuguUCAGGugAAcCAGCg- -3' miRNA: 3'- -GCGu----CGGCGGu--AGUCCugUU-GUCGgu -5' |
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16947 | 3' | -57.5 | NC_004313.1 | + | 19656 | 0.71 | 0.219767 |
Target: 5'- uGCAGCCaccuCCAgguugCAGGugAugGCAGCCAu -3' miRNA: 3'- gCGUCGGc---GGUa----GUCCugU--UGUCGGU- -5' |
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16947 | 3' | -57.5 | NC_004313.1 | + | 21701 | 0.7 | 0.2577 |
Target: 5'- aCGCAacGCCaGCCGUCAGGGCugcaauggaAAUAGCUu -3' miRNA: 3'- -GCGU--CGG-CGGUAGUCCUG---------UUGUCGGu -5' |
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16947 | 3' | -57.5 | NC_004313.1 | + | 28697 | 0.68 | 0.384595 |
Target: 5'- aGCAGaaGCCAUCGGcGugGAU-GCCGc -3' miRNA: 3'- gCGUCggCGGUAGUC-CugUUGuCGGU- -5' |
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16947 | 3' | -57.5 | NC_004313.1 | + | 33446 | 0.72 | 0.202651 |
Target: 5'- aCGCAGgaGUCugggAGGACGACAGCCAg -3' miRNA: 3'- -GCGUCggCGGuag-UCCUGUUGUCGGU- -5' |
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16947 | 3' | -57.5 | NC_004313.1 | + | 37237 | 0.71 | 0.231852 |
Target: 5'- gCGCAGaaaCCGCCGUCAGGGuCAgggaaccacACAGCa- -3' miRNA: 3'- -GCGUC---GGCGGUAGUCCU-GU---------UGUCGgu -5' |
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16947 | 3' | -57.5 | NC_004313.1 | + | 38293 | 0.66 | 0.492885 |
Target: 5'- ---cGCCGCCcgCGuGGAUAauGCAGCCc -3' miRNA: 3'- gcguCGGCGGuaGU-CCUGU--UGUCGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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