miRNA: 3'- uaGCUGACaagaCGCaGCGGACGUGu -5'
miRNA: 3'- -UAGC---UGACA------AGACGC-AGCGGAC-GUGU- -5'
miRNA: 3'- uaGCUGaCAAG---ACGCAGCGGACGUGU- -5'
miRNA: 3'- -UAGCUGACAAGACGCAGCGGACGUGU- -5'
Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 16948 | 5' | -55 | NC_004313.1 | + | 13685 | 0.66 | 0.617029 |
|
Target: 5'- -gCGGCUGccg-GCG-CGCCUGCAUc -3' miRNA: 3'- uaGCUGACaagaCGCaGCGGACGUGu -5' |
|||||||
| 16948 | 5' | -55 | NC_004313.1 | + | 29561 | 0.66 | 0.617029 |
|
Target: 5'- uGUCGaauGCUGUugcagcUUUGCGaUCGCCUGaUACAa -3' miRNA: 3'- -UAGC---UGACA------AGACGC-AGCGGAC-GUGU- -5' |
|||||||
| 16948 | 5' | -55 | NC_004313.1 | + | 18038 | 0.74 | 0.216755 |
|
Target: 5'- -gUGACaGUUUuuuUGCGUUGCCUGCGCGu -3' miRNA: 3'- uaGCUGaCAAG---ACGCAGCGGACGUGU- -5' |
|||||||
| 16948 | 5' | -55 | NC_004313.1 | + | 13530 | 1.07 | 0.000878 |
|
Target: 5'- uAUCGACUGUUCUGCGUCGCCUGCACAg -3' miRNA: 3'- -UAGCUGACAAGACGCAGCGGACGUGU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home