miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16950 3' -52.9 NC_004313.1 + 11388 0.66 0.739155
Target:  5'- cGUCAGGACcAU--UGGUGCCCUGcagcaguCCg -3'
miRNA:   3'- -CGGUCCUGuUAuuGCCGUGGGACu------GG- -5'
16950 3' -52.9 NC_004313.1 + 13763 0.67 0.717218
Target:  5'- gGCCGGG-CAGUAugaaagcagccACGGCACugguaCUUGGCg -3'
miRNA:   3'- -CGGUCCuGUUAU-----------UGCCGUG-----GGACUGg -5'
16950 3' -52.9 NC_004313.1 + 28399 0.67 0.716111
Target:  5'- --aAGGACAaagcacuagcuauGUucgGugGGCGCCCUG-CCg -3'
miRNA:   3'- cggUCCUGU-------------UA---UugCCGUGGGACuGG- -5'
16950 3' -52.9 NC_004313.1 + 12631 0.67 0.710562
Target:  5'- cGCCAGGcuuuuuGCAGUgcGuuaacgaaaucacuuGCGGCGCCCggUGGCa -3'
miRNA:   3'- -CGGUCC------UGUUA--U---------------UGCCGUGGG--ACUGg -5'
16950 3' -52.9 NC_004313.1 + 22858 0.67 0.706108
Target:  5'- aUCAGGA-----ACGGCACCUUGuuCCa -3'
miRNA:   3'- cGGUCCUguuauUGCCGUGGGACu-GG- -5'
16950 3' -52.9 NC_004313.1 + 15671 0.67 0.693797
Target:  5'- uGCCGGuaauacuGACGAUGguACGGCguuacGCCUUGGCa -3'
miRNA:   3'- -CGGUC-------CUGUUAU--UGCCG-----UGGGACUGg -5'
16950 3' -52.9 NC_004313.1 + 9419 0.67 0.692675
Target:  5'- aCCGGGAaguuuuuCGGCACUUUGGCg -3'
miRNA:   3'- cGGUCCUguuauu-GCCGUGGGACUGg -5'
16950 3' -52.9 NC_004313.1 + 7407 0.67 0.683667
Target:  5'- cGCCAgcaGGAUGAUcugGACGGCcuGCCC-GAUCu -3'
miRNA:   3'- -CGGU---CCUGUUA---UUGCCG--UGGGaCUGG- -5'
16950 3' -52.9 NC_004313.1 + 5526 0.68 0.672361
Target:  5'- --uGGGGCGcugAACGGCGCCCcuguucUGACa -3'
miRNA:   3'- cggUCCUGUua-UUGCCGUGGG------ACUGg -5'
16950 3' -52.9 NC_004313.1 + 7987 0.68 0.638248
Target:  5'- cGCCAaauGGAuCGGUcuuACGGUacGCCCcGACCa -3'
miRNA:   3'- -CGGU---CCU-GUUAu--UGCCG--UGGGaCUGG- -5'
16950 3' -52.9 NC_004313.1 + 2909 0.69 0.592726
Target:  5'- aGCCAGGAgGAUAucuggcauguGC-GCACgCUGACg -3'
miRNA:   3'- -CGGUCCUgUUAU----------UGcCGUGgGACUGg -5'
16950 3' -52.9 NC_004313.1 + 32360 0.7 0.525681
Target:  5'- aGUCGGcGAuCAGUGGCGGaCACCa-GACCu -3'
miRNA:   3'- -CGGUC-CU-GUUAUUGCC-GUGGgaCUGG- -5'
16950 3' -52.9 NC_004313.1 + 30333 0.71 0.451429
Target:  5'- aGCCAGGGaggaAGUAACGGC---UUGGCCg -3'
miRNA:   3'- -CGGUCCUg---UUAUUGCCGuggGACUGG- -5'
16950 3' -52.9 NC_004313.1 + 14187 1.15 0.000439
Target:  5'- aGCCAGGACAAUAACGGCACCCUGACCg -3'
miRNA:   3'- -CGGUCCUGUUAUUGCCGUGGGACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.