miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16951 3' -54 NC_004313.1 + 24089 0.66 0.713505
Target:  5'- cGCGCUGA---AACaucaGGCGCUGUUg -3'
miRNA:   3'- -CGCGACUgcaUUGgcaaCCGCGACAG- -5'
16951 3' -54 NC_004313.1 + 7859 0.66 0.679981
Target:  5'- uUGCUGGCGUGACCaaucagcaGUgaUGcccCGCUGUCc -3'
miRNA:   3'- cGCGACUGCAUUGG--------CA--ACc--GCGACAG- -5'
16951 3' -54 NC_004313.1 + 38211 0.67 0.634657
Target:  5'- uGCGCgaUGAUGUcGCCGcUGGcCGUcGUCg -3'
miRNA:   3'- -CGCG--ACUGCAuUGGCaACC-GCGaCAG- -5'
16951 3' -54 NC_004313.1 + 2354 0.67 0.630111
Target:  5'- gGCGCUGugcauguucugguCGUGGCUGgUGGCGCg--- -3'
miRNA:   3'- -CGCGACu------------GCAUUGGCaACCGCGacag -5'
16951 3' -54 NC_004313.1 + 5505 0.67 0.623292
Target:  5'- uCGCUGcgGCGUAaucACUGguggGGCGCUGa- -3'
miRNA:   3'- cGCGAC--UGCAU---UGGCaa--CCGCGACag -5'
16951 3' -54 NC_004313.1 + 15091 0.67 0.611935
Target:  5'- gGCGCUGGCGUGGaugacagaCGaUGGCGUgg-Cg -3'
miRNA:   3'- -CGCGACUGCAUUg-------GCaACCGCGacaG- -5'
16951 3' -54 NC_004313.1 + 2528 0.67 0.600597
Target:  5'- cUGCUGGCGUggUCaccGGCGC-GUCa -3'
miRNA:   3'- cGCGACUGCAuuGGcaaCCGCGaCAG- -5'
16951 3' -54 NC_004313.1 + 16133 0.67 0.600597
Target:  5'- uGCGCUGAUGcug-CGUgaUGGCGCgccGUCc -3'
miRNA:   3'- -CGCGACUGCauugGCA--ACCGCGa--CAG- -5'
16951 3' -54 NC_004313.1 + 11479 0.67 0.600597
Target:  5'- aCGCUGAC--AAUUGgcgUGGCGgUGUCa -3'
miRNA:   3'- cGCGACUGcaUUGGCa--ACCGCgACAG- -5'
16951 3' -54 NC_004313.1 + 2936 0.68 0.589287
Target:  5'- aCGCUGACGcuggacgGACUGgUGGgGCUGa- -3'
miRNA:   3'- cGCGACUGCa------UUGGCaACCgCGACag -5'
16951 3' -54 NC_004313.1 + 15742 0.68 0.566793
Target:  5'- aCGCUGACacucUGACCGgggGGgGCUGa- -3'
miRNA:   3'- cGCGACUGc---AUUGGCaa-CCgCGACag -5'
16951 3' -54 NC_004313.1 + 11130 0.7 0.476551
Target:  5'- gGCGCUG-C-UGGCUGUUGGCGUauccauuggcagccUGUCc -3'
miRNA:   3'- -CGCGACuGcAUUGGCAACCGCG--------------ACAG- -5'
16951 3' -54 NC_004313.1 + 24184 1.11 0.000686
Target:  5'- uGCGCUGACGUAACCGUUGGCGCUGUCc -3'
miRNA:   3'- -CGCGACUGCAUUGGCAACCGCGACAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.