Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16954 | 5' | -48.6 | NC_004313.1 | + | 38133 | 0.66 | 0.934676 |
Target: 5'- uGCGCCAgcGUGacguUGCCGcccUUGAUGCa-- -3' miRNA: 3'- -CGCGGUguUAU----ACGGU---AACUACGagg -5' |
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16954 | 5' | -48.6 | NC_004313.1 | + | 13632 | 0.66 | 0.945539 |
Target: 5'- cGCGCCgGCAGcc-GCCGUuauUGAgGCUCa -3' miRNA: 3'- -CGCGG-UGUUauaCGGUA---ACUaCGAGg -5' |
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16954 | 5' | -48.6 | NC_004313.1 | + | 24446 | 0.66 | 0.934676 |
Target: 5'- aGCGCCuguuuguCGAUGuUGCuCAUUGGgcaGcCUCCa -3' miRNA: 3'- -CGCGGu------GUUAU-ACG-GUAACUa--C-GAGG- -5' |
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16954 | 5' | -48.6 | NC_004313.1 | + | 1687 | 0.66 | 0.922533 |
Target: 5'- gGCGCCACGuuucuggGUGCCGUaUGAcacGgUCUa -3' miRNA: 3'- -CGCGGUGUua-----UACGGUA-ACUa--CgAGG- -5' |
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16954 | 5' | -48.6 | NC_004313.1 | + | 4723 | 0.67 | 0.901915 |
Target: 5'- uGCGCCAgGAg--GCCAcggUGAUcaccgugggcgGUUCCg -3' miRNA: 3'- -CGCGGUgUUauaCGGUa--ACUA-----------CGAGG- -5' |
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16954 | 5' | -48.6 | NC_004313.1 | + | 9619 | 0.68 | 0.878485 |
Target: 5'- uGCGCCAUAAUcgGCUuuUUGAgcacaaGUUCUu -3' miRNA: 3'- -CGCGGUGUUAuaCGGu-AACUa-----CGAGG- -5' |
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16954 | 5' | -48.6 | NC_004313.1 | + | 14509 | 0.68 | 0.875992 |
Target: 5'- uGCGCCAUucUGUGCUgcagaggugaaaccGUaagguucaaGAUGCUCCa -3' miRNA: 3'- -CGCGGUGuuAUACGG--------------UAa--------CUACGAGG- -5' |
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16954 | 5' | -48.6 | NC_004313.1 | + | 4272 | 0.69 | 0.813928 |
Target: 5'- uGCGCCAUAGcccccgGCCAUgaAUGCUUUg -3' miRNA: 3'- -CGCGGUGUUaua---CGGUAacUACGAGG- -5' |
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16954 | 5' | -48.6 | NC_004313.1 | + | 29345 | 0.7 | 0.771911 |
Target: 5'- gGCuaCugAAUGUGCCAggUGAUagGUUCCu -3' miRNA: 3'- -CGcgGugUUAUACGGUa-ACUA--CGAGG- -5' |
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16954 | 5' | -48.6 | NC_004313.1 | + | 6327 | 0.74 | 0.527932 |
Target: 5'- uCGCCGCGGUAUcaccGCCGaucaUGAagUGCUCCa -3' miRNA: 3'- cGCGGUGUUAUA----CGGUa---ACU--ACGAGG- -5' |
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16954 | 5' | -48.6 | NC_004313.1 | + | 7639 | 0.76 | 0.419366 |
Target: 5'- uGCGCCGCGAg--GCCGcUGGUGaugUCCg -3' miRNA: 3'- -CGCGGUGUUauaCGGUaACUACg--AGG- -5' |
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16954 | 5' | -48.6 | NC_004313.1 | + | 30761 | 0.77 | 0.361067 |
Target: 5'- aGCGCCACAGc--GUCAUUGAUGCggUCg -3' miRNA: 3'- -CGCGGUGUUauaCGGUAACUACGa-GG- -5' |
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16954 | 5' | -48.6 | NC_004313.1 | + | 34119 | 1.16 | 0.001006 |
Target: 5'- gGCGCCACAAUAUGCCAUUGAUGCUCCg -3' miRNA: 3'- -CGCGGUGUUAUACGGUAACUACGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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