Results 1 - 5 of 5 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16960 | 5' | -59.1 | NC_004322.1 | + | 4235 | 0.67 | 0.074931 |
Target: 5'- uCUCUCCaaaccguuaGUUAUCCACgccguagcuGGCGCcGGGAa -3' miRNA: 3'- cGAGAGG---------CAGUAGGUG---------CCGCG-CCCUc -5' |
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16960 | 5' | -59.1 | NC_004322.1 | + | 1948 | 0.69 | 0.045508 |
Target: 5'- gGCUCUCCuuguGUagugcuuUCC-CGGUGCGGGAa -3' miRNA: 3'- -CGAGAGG----CAgu-----AGGuGCCGCGCCCUc -5' |
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16960 | 5' | -59.1 | NC_004322.1 | + | 1887 | 0.7 | 0.037208 |
Target: 5'- gGCUCUCaGUCggucggggGUCCAgGGUGUGGGGc -3' miRNA: 3'- -CGAGAGgCAG--------UAGGUgCCGCGCCCUc -5' |
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16960 | 5' | -59.1 | NC_004322.1 | + | 2709 | 0.76 | 0.013196 |
Target: 5'- cGUUCga-GUUgaugaaguggauggaGUCCACGGCGCGGGAGa -3' miRNA: 3'- -CGAGaggCAG---------------UAGGUGCCGCGCCCUC- -5' |
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16960 | 5' | -59.1 | NC_004322.1 | + | 1997 | 1.1 | 0.000011 |
Target: 5'- gGCUCUCCGUCAUCCACGGCGCGGGAGg -3' miRNA: 3'- -CGAGAGGCAGUAGGUGCCGCGCCCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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