miRNA display CGI


Results 1 - 20 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1697 3' -49.4 NC_001347.2 + 52494 0.66 0.999846
Target:  5'- gGUguGGC-UGUCUGuuuGUCugUGCGCc -3'
miRNA:   3'- gCAguUUGuACAGGCu--UAGugGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 129712 0.66 0.999835
Target:  5'- uCGUC-AACA-GUUCGAuuggcuggaggaacGUUGCUGCGCa -3'
miRNA:   3'- -GCAGuUUGUaCAGGCU--------------UAGUGGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 13523 0.66 0.999804
Target:  5'- cCGcCGGGCG-GcCCGGGcCGCCGUGCu -3'
miRNA:   3'- -GCaGUUUGUaCaGGCUUaGUGGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 63573 0.66 0.999804
Target:  5'- gCGUUcuggacuGCAUccGUCCGGuggUGCCGCGCu -3'
miRNA:   3'- -GCAGuu-----UGUA--CAGGCUua-GUGGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 197795 0.66 0.999752
Target:  5'- aCGUCAc-CGUGUgacgCCGGgcaagcaagaaAUCACCGaCGCg -3'
miRNA:   3'- -GCAGUuuGUACA----GGCU-----------UAGUGGC-GCG- -5'
1697 3' -49.4 NC_001347.2 + 138097 0.66 0.999688
Target:  5'- gGUCuucgaguACGUGUCgGGGgucugUGCCGCGUa -3'
miRNA:   3'- gCAGuu-----UGUACAGgCUUa----GUGGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 128866 0.66 0.999688
Target:  5'- cCGUCGcGCAcggcgcuucUGUCUGGAUUAcgaacCCGUGCc -3'
miRNA:   3'- -GCAGUuUGU---------ACAGGCUUAGU-----GGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 111081 0.67 0.99961
Target:  5'- --cCGAuCGUGUgCGAAUCACCcucCGCg -3'
miRNA:   3'- gcaGUUuGUACAgGCUUAGUGGc--GCG- -5'
1697 3' -49.4 NC_001347.2 + 166053 0.67 0.999516
Target:  5'- uGUCGGGCGUcaugCgGAGUCGCgGCGg -3'
miRNA:   3'- gCAGUUUGUAca--GgCUUAGUGgCGCg -5'
1697 3' -49.4 NC_001347.2 + 130740 0.67 0.999402
Target:  5'- aGUCccccGGCgccccucgccgGUGUCCgGAGUCACCGUGg -3'
miRNA:   3'- gCAGu---UUG-----------UACAGG-CUUAGUGGCGCg -5'
1697 3' -49.4 NC_001347.2 + 152709 0.67 0.999402
Target:  5'- aUGUUGAGCGUGacgCUGuAGUCuuCGCGCg -3'
miRNA:   3'- -GCAGUUUGUACa--GGC-UUAGugGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 210870 0.67 0.999402
Target:  5'- aCGUCAAagGCcUGUCC-----GCCGCGCc -3'
miRNA:   3'- -GCAGUU--UGuACAGGcuuagUGGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 222407 0.67 0.999402
Target:  5'- aGUCGGcCGUGga-GAggcGUCGCCGCGUc -3'
miRNA:   3'- gCAGUUuGUACaggCU---UAGUGGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 95112 0.67 0.999266
Target:  5'- gCGUCGcACAUgacGUCUGAG-CGCCGCu- -3'
miRNA:   3'- -GCAGUuUGUA---CAGGCUUaGUGGCGcg -5'
1697 3' -49.4 NC_001347.2 + 207328 0.67 0.999173
Target:  5'- cCGUCuuGCAagauguuaguggugaUGUCgcugaaauugCGGAUCACCGUGUc -3'
miRNA:   3'- -GCAGuuUGU---------------ACAG----------GCUUAGUGGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 93766 0.67 0.999104
Target:  5'- gCGUgAuAgAUGaauUCCucGUCGCCGCGCa -3'
miRNA:   3'- -GCAgUuUgUAC---AGGcuUAGUGGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 177605 0.67 0.999087
Target:  5'- --cCGAGCG-GUCCGuggacuuGGUgGCCGCGCu -3'
miRNA:   3'- gcaGUUUGUaCAGGC-------UUAgUGGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 99524 0.68 0.998913
Target:  5'- aCGUCGAACGcgaucUGcggCCGggUCGCgCG-GCa -3'
miRNA:   3'- -GCAGUUUGU-----ACa--GGCuuAGUG-GCgCG- -5'
1697 3' -49.4 NC_001347.2 + 153789 0.68 0.998913
Target:  5'- cCGcUCAGGCcgugguaGUCCGAGUCGCCuccGgGCg -3'
miRNA:   3'- -GC-AGUUUGua-----CAGGCUUAGUGG---CgCG- -5'
1697 3' -49.4 NC_001347.2 + 88223 0.68 0.998687
Target:  5'- cCGcUCAcGC-UGUCCGAgggGUCGCUGcCGCc -3'
miRNA:   3'- -GC-AGUuUGuACAGGCU---UAGUGGC-GCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.