miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1697 3' -49.4 NC_001347.2 + 97374 1.14 0.010485
Target:  5'- cCGUCAAACAUGUCCGAAUCACCGCGCg -3'
miRNA:   3'- -GCAGUUUGUACAGGCUUAGUGGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 855 0.77 0.85067
Target:  5'- aCGUCGGAgGUGUCCGGcgcccauggcccagcGcaacggcaugUCGCCGCGCc -3'
miRNA:   3'- -GCAGUUUgUACAGGCU---------------U----------AGUGGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 124195 0.76 0.877964
Target:  5'- cCGUCAGACGcuggugaucgGUCCGggUCACaCGCa- -3'
miRNA:   3'- -GCAGUUUGUa---------CAGGCuuAGUG-GCGcg -5'
1697 3' -49.4 NC_001347.2 + 31303 0.75 0.911059
Target:  5'- aCGUCccugg-GUCCGAGgucggCACCGCGCc -3'
miRNA:   3'- -GCAGuuuguaCAGGCUUa----GUGGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 146860 0.75 0.91697
Target:  5'- aGU-GAACAUGUCCGAcu--CCGCGCu -3'
miRNA:   3'- gCAgUUUGUACAGGCUuaguGGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 178870 0.74 0.928066
Target:  5'- cCGUCGAgaGCGaguUGUCCucGUCGCCGcCGCu -3'
miRNA:   3'- -GCAGUU--UGU---ACAGGcuUAGUGGC-GCG- -5'
1697 3' -49.4 NC_001347.2 + 20352 0.74 0.941972
Target:  5'- uCGUCuccuaaucGACGUGUCCGcggcgugaccacGUCACCGUGCc -3'
miRNA:   3'- -GCAGu-------UUGUACAGGCu-----------UAGUGGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 35289 0.73 0.955572
Target:  5'- gGUC-AGCGUGUCUGA--UACCGgGCg -3'
miRNA:   3'- gCAGuUUGUACAGGCUuaGUGGCgCG- -5'
1697 3' -49.4 NC_001347.2 + 26265 0.72 0.974878
Target:  5'- uGUCAuGCGUGUCuaCGGAUUGCUGaCGCu -3'
miRNA:   3'- gCAGUuUGUACAG--GCUUAGUGGC-GCG- -5'
1697 3' -49.4 NC_001347.2 + 126487 0.72 0.974878
Target:  5'- cCGUCAGcGCGUGUCCGcuuUCGuggcguacgccgUCGCGCg -3'
miRNA:   3'- -GCAGUU-UGUACAGGCuu-AGU------------GGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 192733 0.72 0.974878
Target:  5'- cCGUCAAcaGCGUG-CCuu-UUGCCGCGCg -3'
miRNA:   3'- -GCAGUU--UGUACaGGcuuAGUGGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 139630 0.71 0.983771
Target:  5'- aCGUC-AugGUGUCa--AUCGCUGCGCu -3'
miRNA:   3'- -GCAGuUugUACAGgcuUAGUGGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 182926 0.71 0.983771
Target:  5'- uCGUCcu-CGUccCCGAAcUCGCCGCGCu -3'
miRNA:   3'- -GCAGuuuGUAcaGGCUU-AGUGGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 166218 0.71 0.987203
Target:  5'- cCGUCAGACAgagCUGug-CGCCGCGg -3'
miRNA:   3'- -GCAGUUUGUacaGGCuuaGUGGCGCg -5'
1697 3' -49.4 NC_001347.2 + 195821 0.71 0.988694
Target:  5'- aGUCGGACcucgcUGUCUGG---GCCGCGCu -3'
miRNA:   3'- gCAGUUUGu----ACAGGCUuagUGGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 171940 0.71 0.988694
Target:  5'- gCGUCGAuuuguGCAaGUCgGGuUUGCCGCGCu -3'
miRNA:   3'- -GCAGUU-----UGUaCAGgCUuAGUGGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 156458 0.7 0.992369
Target:  5'- aCGUCGuuGGCG-GUCCGGaaccacGUCACCGUaaGCa -3'
miRNA:   3'- -GCAGU--UUGUaCAGGCU------UAGUGGCG--CG- -5'
1697 3' -49.4 NC_001347.2 + 167934 0.7 0.993356
Target:  5'- aCGUCAcGCAugUGUUCGg--CACCGgGCu -3'
miRNA:   3'- -GCAGUuUGU--ACAGGCuuaGUGGCgCG- -5'
1697 3' -49.4 NC_001347.2 + 196178 0.7 0.994238
Target:  5'- cCGUCAA----GUaCCGGAcgCACCGCGCc -3'
miRNA:   3'- -GCAGUUuguaCA-GGCUUa-GUGGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 68475 0.69 0.99572
Target:  5'- gCGUCuuggcGCcgG-CCGAAgccUCGCCGUGCu -3'
miRNA:   3'- -GCAGuu---UGuaCaGGCUU---AGUGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.