Results 21 - 40 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1697 | 3' | -49.4 | NC_001347.2 | + | 139351 | 0.69 | 0.99572 |
Target: 5'- uGUCAGGC--GUCCGAGaCgACUGUGCa -3' miRNA: 3'- gCAGUUUGuaCAGGCUUaG-UGGCGCG- -5' |
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1697 | 3' | -49.4 | NC_001347.2 | + | 184419 | 0.69 | 0.996874 |
Target: 5'- uCGUgAAGCGgcgCCGggUCGCUGUGa -3' miRNA: 3'- -GCAgUUUGUacaGGCuuAGUGGCGCg -5' |
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1697 | 3' | -49.4 | NC_001347.2 | + | 24377 | 0.69 | 0.996874 |
Target: 5'- -uUCGAGguUgucGUCCGAAUCGCCG-GCu -3' miRNA: 3'- gcAGUUUguA---CAGGCUUAGUGGCgCG- -5' |
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1697 | 3' | -49.4 | NC_001347.2 | + | 57073 | 0.69 | 0.996874 |
Target: 5'- aGUCAAACAgauuaagGUUCGAGUggaCAUgGUGCg -3' miRNA: 3'- gCAGUUUGUa------CAGGCUUA---GUGgCGCG- -5' |
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1697 | 3' | -49.4 | NC_001347.2 | + | 30826 | 0.69 | 0.997347 |
Target: 5'- gGUUuggGGACGUGUCCGGc-UACCGUGUc -3' miRNA: 3'- gCAG---UUUGUACAGGCUuaGUGGCGCG- -5' |
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1697 | 3' | -49.4 | NC_001347.2 | + | 85531 | 0.69 | 0.997347 |
Target: 5'- gCGcUUGAGCGUGgccCUGAAgagCGCCGCGUc -3' miRNA: 3'- -GC-AGUUUGUACa--GGCUUa--GUGGCGCG- -5' |
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1697 | 3' | -49.4 | NC_001347.2 | + | 86188 | 0.68 | 0.997759 |
Target: 5'- aGcCAcACGUagucGUCCGAGcCGCCGUGCc -3' miRNA: 3'- gCaGUuUGUA----CAGGCUUaGUGGCGCG- -5' |
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1697 | 3' | -49.4 | NC_001347.2 | + | 193070 | 0.68 | 0.997759 |
Target: 5'- uCGUCGcggacugccGGCAUGUCCG----GCCGuCGCa -3' miRNA: 3'- -GCAGU---------UUGUACAGGCuuagUGGC-GCG- -5' |
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1697 | 3' | -49.4 | NC_001347.2 | + | 172648 | 0.68 | 0.998115 |
Target: 5'- aGUCGAGCuugcacgcUGUCCGGgauggAUCGCaagaCGCGCc -3' miRNA: 3'- gCAGUUUGu-------ACAGGCU-----UAGUG----GCGCG- -5' |
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1697 | 3' | -49.4 | NC_001347.2 | + | 170076 | 0.68 | 0.998115 |
Target: 5'- uCGUCAGuugGCGUc-CCGAGUCGCCGUc- -3' miRNA: 3'- -GCAGUU---UGUAcaGGCUUAGUGGCGcg -5' |
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1697 | 3' | -49.4 | NC_001347.2 | + | 98025 | 0.68 | 0.998115 |
Target: 5'- gCGUCGGACGcuccUCCGGAcgaaaCGCCGCGg -3' miRNA: 3'- -GCAGUUUGUac--AGGCUUa----GUGGCGCg -5' |
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1697 | 3' | -49.4 | NC_001347.2 | + | 104411 | 0.68 | 0.998423 |
Target: 5'- aCGUUcggcAGCAUGUCCGAGcgCaauGCCGcCGCc -3' miRNA: 3'- -GCAGu---UUGUACAGGCUUa-G---UGGC-GCG- -5' |
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1697 | 3' | -49.4 | NC_001347.2 | + | 88223 | 0.68 | 0.998687 |
Target: 5'- cCGcUCAcGC-UGUCCGAgggGUCGCUGcCGCc -3' miRNA: 3'- -GC-AGUuUGuACAGGCU---UAGUGGC-GCG- -5' |
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1697 | 3' | -49.4 | NC_001347.2 | + | 198567 | 0.68 | 0.998687 |
Target: 5'- aGUCAAACAacgCCGGcgUGCuCGCGUa -3' miRNA: 3'- gCAGUUUGUacaGGCUuaGUG-GCGCG- -5' |
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1697 | 3' | -49.4 | NC_001347.2 | + | 65543 | 0.68 | 0.998687 |
Target: 5'- gCGUC-AACcUG-CCGGcUCACuCGCGCu -3' miRNA: 3'- -GCAGuUUGuACaGGCUuAGUG-GCGCG- -5' |
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1697 | 3' | -49.4 | NC_001347.2 | + | 153789 | 0.68 | 0.998913 |
Target: 5'- cCGcUCAGGCcgugguaGUCCGAGUCGCCuccGgGCg -3' miRNA: 3'- -GC-AGUUUGua-----CAGGCUUAGUGG---CgCG- -5' |
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1697 | 3' | -49.4 | NC_001347.2 | + | 99524 | 0.68 | 0.998913 |
Target: 5'- aCGUCGAACGcgaucUGcggCCGggUCGCgCG-GCa -3' miRNA: 3'- -GCAGUUUGU-----ACa--GGCuuAGUG-GCgCG- -5' |
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1697 | 3' | -49.4 | NC_001347.2 | + | 177605 | 0.67 | 0.999087 |
Target: 5'- --cCGAGCG-GUCCGuggacuuGGUgGCCGCGCu -3' miRNA: 3'- gcaGUUUGUaCAGGC-------UUAgUGGCGCG- -5' |
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1697 | 3' | -49.4 | NC_001347.2 | + | 93766 | 0.67 | 0.999104 |
Target: 5'- gCGUgAuAgAUGaauUCCucGUCGCCGCGCa -3' miRNA: 3'- -GCAgUuUgUAC---AGGcuUAGUGGCGCG- -5' |
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1697 | 3' | -49.4 | NC_001347.2 | + | 207328 | 0.67 | 0.999173 |
Target: 5'- cCGUCuuGCAagauguuaguggugaUGUCgcugaaauugCGGAUCACCGUGUc -3' miRNA: 3'- -GCAGuuUGU---------------ACAG----------GCUUAGUGGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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