miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1697 3' -49.4 NC_001347.2 + 88223 0.68 0.998687
Target:  5'- cCGcUCAcGC-UGUCCGAgggGUCGCUGcCGCc -3'
miRNA:   3'- -GC-AGUuUGuACAGGCU---UAGUGGC-GCG- -5'
1697 3' -49.4 NC_001347.2 + 198567 0.68 0.998687
Target:  5'- aGUCAAACAacgCCGGcgUGCuCGCGUa -3'
miRNA:   3'- gCAGUUUGUacaGGCUuaGUG-GCGCG- -5'
1697 3' -49.4 NC_001347.2 + 104411 0.68 0.998423
Target:  5'- aCGUUcggcAGCAUGUCCGAGcgCaauGCCGcCGCc -3'
miRNA:   3'- -GCAGu---UUGUACAGGCUUa-G---UGGC-GCG- -5'
1697 3' -49.4 NC_001347.2 + 170076 0.68 0.998115
Target:  5'- uCGUCAGuugGCGUc-CCGAGUCGCCGUc- -3'
miRNA:   3'- -GCAGUU---UGUAcaGGCUUAGUGGCGcg -5'
1697 3' -49.4 NC_001347.2 + 172648 0.68 0.998115
Target:  5'- aGUCGAGCuugcacgcUGUCCGGgauggAUCGCaagaCGCGCc -3'
miRNA:   3'- gCAGUUUGu-------ACAGGCU-----UAGUG----GCGCG- -5'
1697 3' -49.4 NC_001347.2 + 98025 0.68 0.998115
Target:  5'- gCGUCGGACGcuccUCCGGAcgaaaCGCCGCGg -3'
miRNA:   3'- -GCAGUUUGUac--AGGCUUa----GUGGCGCg -5'
1697 3' -49.4 NC_001347.2 + 86188 0.68 0.997759
Target:  5'- aGcCAcACGUagucGUCCGAGcCGCCGUGCc -3'
miRNA:   3'- gCaGUuUGUA----CAGGCUUaGUGGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 193070 0.68 0.997759
Target:  5'- uCGUCGcggacugccGGCAUGUCCG----GCCGuCGCa -3'
miRNA:   3'- -GCAGU---------UUGUACAGGCuuagUGGC-GCG- -5'
1697 3' -49.4 NC_001347.2 + 30826 0.69 0.997347
Target:  5'- gGUUuggGGACGUGUCCGGc-UACCGUGUc -3'
miRNA:   3'- gCAG---UUUGUACAGGCUuaGUGGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 85531 0.69 0.997347
Target:  5'- gCGcUUGAGCGUGgccCUGAAgagCGCCGCGUc -3'
miRNA:   3'- -GC-AGUUUGUACa--GGCUUa--GUGGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 57073 0.69 0.996874
Target:  5'- aGUCAAACAgauuaagGUUCGAGUggaCAUgGUGCg -3'
miRNA:   3'- gCAGUUUGUa------CAGGCUUA---GUGgCGCG- -5'
1697 3' -49.4 NC_001347.2 + 24377 0.69 0.996874
Target:  5'- -uUCGAGguUgucGUCCGAAUCGCCG-GCu -3'
miRNA:   3'- gcAGUUUguA---CAGGCUUAGUGGCgCG- -5'
1697 3' -49.4 NC_001347.2 + 184419 0.69 0.996874
Target:  5'- uCGUgAAGCGgcgCCGggUCGCUGUGa -3'
miRNA:   3'- -GCAgUUUGUacaGGCuuAGUGGCGCg -5'
1697 3' -49.4 NC_001347.2 + 68475 0.69 0.99572
Target:  5'- gCGUCuuggcGCcgG-CCGAAgccUCGCCGUGCu -3'
miRNA:   3'- -GCAGuu---UGuaCaGGCUU---AGUGGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 139351 0.69 0.99572
Target:  5'- uGUCAGGC--GUCCGAGaCgACUGUGCa -3'
miRNA:   3'- gCAGUUUGuaCAGGCUUaG-UGGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 196178 0.7 0.994238
Target:  5'- cCGUCAA----GUaCCGGAcgCACCGCGCc -3'
miRNA:   3'- -GCAGUUuguaCA-GGCUUa-GUGGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 167934 0.7 0.993356
Target:  5'- aCGUCAcGCAugUGUUCGg--CACCGgGCu -3'
miRNA:   3'- -GCAGUuUGU--ACAGGCuuaGUGGCgCG- -5'
1697 3' -49.4 NC_001347.2 + 156458 0.7 0.992369
Target:  5'- aCGUCGuuGGCG-GUCCGGaaccacGUCACCGUaaGCa -3'
miRNA:   3'- -GCAGU--UUGUaCAGGCU------UAGUGGCG--CG- -5'
1697 3' -49.4 NC_001347.2 + 195821 0.71 0.988694
Target:  5'- aGUCGGACcucgcUGUCUGG---GCCGCGCu -3'
miRNA:   3'- gCAGUUUGu----ACAGGCUuagUGGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 171940 0.71 0.988694
Target:  5'- gCGUCGAuuuguGCAaGUCgGGuUUGCCGCGCu -3'
miRNA:   3'- -GCAGUU-----UGUaCAGgCUuAGUGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.