miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1697 3' -49.4 NC_001347.2 + 855 0.77 0.85067
Target:  5'- aCGUCGGAgGUGUCCGGcgcccauggcccagcGcaacggcaugUCGCCGCGCc -3'
miRNA:   3'- -GCAGUUUgUACAGGCU---------------U----------AGUGGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 13523 0.66 0.999804
Target:  5'- cCGcCGGGCG-GcCCGGGcCGCCGUGCu -3'
miRNA:   3'- -GCaGUUUGUaCaGGCUUaGUGGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 20352 0.74 0.941972
Target:  5'- uCGUCuccuaaucGACGUGUCCGcggcgugaccacGUCACCGUGCc -3'
miRNA:   3'- -GCAGu-------UUGUACAGGCu-----------UAGUGGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 24377 0.69 0.996874
Target:  5'- -uUCGAGguUgucGUCCGAAUCGCCG-GCu -3'
miRNA:   3'- gcAGUUUguA---CAGGCUUAGUGGCgCG- -5'
1697 3' -49.4 NC_001347.2 + 26265 0.72 0.974878
Target:  5'- uGUCAuGCGUGUCuaCGGAUUGCUGaCGCu -3'
miRNA:   3'- gCAGUuUGUACAG--GCUUAGUGGC-GCG- -5'
1697 3' -49.4 NC_001347.2 + 30826 0.69 0.997347
Target:  5'- gGUUuggGGACGUGUCCGGc-UACCGUGUc -3'
miRNA:   3'- gCAG---UUUGUACAGGCUuaGUGGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 31303 0.75 0.911059
Target:  5'- aCGUCccugg-GUCCGAGgucggCACCGCGCc -3'
miRNA:   3'- -GCAGuuuguaCAGGCUUa----GUGGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 35289 0.73 0.955572
Target:  5'- gGUC-AGCGUGUCUGA--UACCGgGCg -3'
miRNA:   3'- gCAGuUUGUACAGGCUuaGUGGCgCG- -5'
1697 3' -49.4 NC_001347.2 + 52494 0.66 0.999846
Target:  5'- gGUguGGC-UGUCUGuuuGUCugUGCGCc -3'
miRNA:   3'- gCAguUUGuACAGGCu--UAGugGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 57073 0.69 0.996874
Target:  5'- aGUCAAACAgauuaagGUUCGAGUggaCAUgGUGCg -3'
miRNA:   3'- gCAGUUUGUa------CAGGCUUA---GUGgCGCG- -5'
1697 3' -49.4 NC_001347.2 + 63573 0.66 0.999804
Target:  5'- gCGUUcuggacuGCAUccGUCCGGuggUGCCGCGCu -3'
miRNA:   3'- -GCAGuu-----UGUA--CAGGCUua-GUGGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 65543 0.68 0.998687
Target:  5'- gCGUC-AACcUG-CCGGcUCACuCGCGCu -3'
miRNA:   3'- -GCAGuUUGuACaGGCUuAGUG-GCGCG- -5'
1697 3' -49.4 NC_001347.2 + 68475 0.69 0.99572
Target:  5'- gCGUCuuggcGCcgG-CCGAAgccUCGCCGUGCu -3'
miRNA:   3'- -GCAGuu---UGuaCaGGCUU---AGUGGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 85531 0.69 0.997347
Target:  5'- gCGcUUGAGCGUGgccCUGAAgagCGCCGCGUc -3'
miRNA:   3'- -GC-AGUUUGUACa--GGCUUa--GUGGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 86188 0.68 0.997759
Target:  5'- aGcCAcACGUagucGUCCGAGcCGCCGUGCc -3'
miRNA:   3'- gCaGUuUGUA----CAGGCUUaGUGGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 88223 0.68 0.998687
Target:  5'- cCGcUCAcGC-UGUCCGAgggGUCGCUGcCGCc -3'
miRNA:   3'- -GC-AGUuUGuACAGGCU---UAGUGGC-GCG- -5'
1697 3' -49.4 NC_001347.2 + 93766 0.67 0.999104
Target:  5'- gCGUgAuAgAUGaauUCCucGUCGCCGCGCa -3'
miRNA:   3'- -GCAgUuUgUAC---AGGcuUAGUGGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 95112 0.67 0.999266
Target:  5'- gCGUCGcACAUgacGUCUGAG-CGCCGCu- -3'
miRNA:   3'- -GCAGUuUGUA---CAGGCUUaGUGGCGcg -5'
1697 3' -49.4 NC_001347.2 + 97374 1.14 0.010485
Target:  5'- cCGUCAAACAUGUCCGAAUCACCGCGCg -3'
miRNA:   3'- -GCAGUUUGUACAGGCUUAGUGGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 98025 0.68 0.998115
Target:  5'- gCGUCGGACGcuccUCCGGAcgaaaCGCCGCGg -3'
miRNA:   3'- -GCAGUUUGUac--AGGCUUa----GUGGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.