miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1697 3' -49.4 NC_001347.2 + 99524 0.68 0.998913
Target:  5'- aCGUCGAACGcgaucUGcggCCGggUCGCgCG-GCa -3'
miRNA:   3'- -GCAGUUUGU-----ACa--GGCuuAGUG-GCgCG- -5'
1697 3' -49.4 NC_001347.2 + 104411 0.68 0.998423
Target:  5'- aCGUUcggcAGCAUGUCCGAGcgCaauGCCGcCGCc -3'
miRNA:   3'- -GCAGu---UUGUACAGGCUUa-G---UGGC-GCG- -5'
1697 3' -49.4 NC_001347.2 + 111081 0.67 0.99961
Target:  5'- --cCGAuCGUGUgCGAAUCACCcucCGCg -3'
miRNA:   3'- gcaGUUuGUACAgGCUUAGUGGc--GCG- -5'
1697 3' -49.4 NC_001347.2 + 124195 0.76 0.877964
Target:  5'- cCGUCAGACGcuggugaucgGUCCGggUCACaCGCa- -3'
miRNA:   3'- -GCAGUUUGUa---------CAGGCuuAGUG-GCGcg -5'
1697 3' -49.4 NC_001347.2 + 126487 0.72 0.974878
Target:  5'- cCGUCAGcGCGUGUCCGcuuUCGuggcguacgccgUCGCGCg -3'
miRNA:   3'- -GCAGUU-UGUACAGGCuu-AGU------------GGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 128866 0.66 0.999688
Target:  5'- cCGUCGcGCAcggcgcuucUGUCUGGAUUAcgaacCCGUGCc -3'
miRNA:   3'- -GCAGUuUGU---------ACAGGCUUAGU-----GGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 129712 0.66 0.999835
Target:  5'- uCGUC-AACA-GUUCGAuuggcuggaggaacGUUGCUGCGCa -3'
miRNA:   3'- -GCAGuUUGUaCAGGCU--------------UAGUGGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 130740 0.67 0.999402
Target:  5'- aGUCccccGGCgccccucgccgGUGUCCgGAGUCACCGUGg -3'
miRNA:   3'- gCAGu---UUG-----------UACAGG-CUUAGUGGCGCg -5'
1697 3' -49.4 NC_001347.2 + 138097 0.66 0.999688
Target:  5'- gGUCuucgaguACGUGUCgGGGgucugUGCCGCGUa -3'
miRNA:   3'- gCAGuu-----UGUACAGgCUUa----GUGGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 139351 0.69 0.99572
Target:  5'- uGUCAGGC--GUCCGAGaCgACUGUGCa -3'
miRNA:   3'- gCAGUUUGuaCAGGCUUaG-UGGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 139630 0.71 0.983771
Target:  5'- aCGUC-AugGUGUCa--AUCGCUGCGCu -3'
miRNA:   3'- -GCAGuUugUACAGgcuUAGUGGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 146860 0.75 0.91697
Target:  5'- aGU-GAACAUGUCCGAcu--CCGCGCu -3'
miRNA:   3'- gCAgUUUGUACAGGCUuaguGGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 152709 0.67 0.999402
Target:  5'- aUGUUGAGCGUGacgCUGuAGUCuuCGCGCg -3'
miRNA:   3'- -GCAGUUUGUACa--GGC-UUAGugGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 153789 0.68 0.998913
Target:  5'- cCGcUCAGGCcgugguaGUCCGAGUCGCCuccGgGCg -3'
miRNA:   3'- -GC-AGUUUGua-----CAGGCUUAGUGG---CgCG- -5'
1697 3' -49.4 NC_001347.2 + 156458 0.7 0.992369
Target:  5'- aCGUCGuuGGCG-GUCCGGaaccacGUCACCGUaaGCa -3'
miRNA:   3'- -GCAGU--UUGUaCAGGCU------UAGUGGCG--CG- -5'
1697 3' -49.4 NC_001347.2 + 166053 0.67 0.999516
Target:  5'- uGUCGGGCGUcaugCgGAGUCGCgGCGg -3'
miRNA:   3'- gCAGUUUGUAca--GgCUUAGUGgCGCg -5'
1697 3' -49.4 NC_001347.2 + 166218 0.71 0.987203
Target:  5'- cCGUCAGACAgagCUGug-CGCCGCGg -3'
miRNA:   3'- -GCAGUUUGUacaGGCuuaGUGGCGCg -5'
1697 3' -49.4 NC_001347.2 + 167934 0.7 0.993356
Target:  5'- aCGUCAcGCAugUGUUCGg--CACCGgGCu -3'
miRNA:   3'- -GCAGUuUGU--ACAGGCuuaGUGGCgCG- -5'
1697 3' -49.4 NC_001347.2 + 170076 0.68 0.998115
Target:  5'- uCGUCAGuugGCGUc-CCGAGUCGCCGUc- -3'
miRNA:   3'- -GCAGUU---UGUAcaGGCUUAGUGGCGcg -5'
1697 3' -49.4 NC_001347.2 + 171940 0.71 0.988694
Target:  5'- gCGUCGAuuuguGCAaGUCgGGuUUGCCGCGCu -3'
miRNA:   3'- -GCAGUU-----UGUaCAGgCUuAGUGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.