miRNA display CGI


Results 41 - 54 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1697 3' -49.4 NC_001347.2 + 172648 0.68 0.998115
Target:  5'- aGUCGAGCuugcacgcUGUCCGGgauggAUCGCaagaCGCGCc -3'
miRNA:   3'- gCAGUUUGu-------ACAGGCU-----UAGUG----GCGCG- -5'
1697 3' -49.4 NC_001347.2 + 177605 0.67 0.999087
Target:  5'- --cCGAGCG-GUCCGuggacuuGGUgGCCGCGCu -3'
miRNA:   3'- gcaGUUUGUaCAGGC-------UUAgUGGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 178870 0.74 0.928066
Target:  5'- cCGUCGAgaGCGaguUGUCCucGUCGCCGcCGCu -3'
miRNA:   3'- -GCAGUU--UGU---ACAGGcuUAGUGGC-GCG- -5'
1697 3' -49.4 NC_001347.2 + 182926 0.71 0.983771
Target:  5'- uCGUCcu-CGUccCCGAAcUCGCCGCGCu -3'
miRNA:   3'- -GCAGuuuGUAcaGGCUU-AGUGGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 184419 0.69 0.996874
Target:  5'- uCGUgAAGCGgcgCCGggUCGCUGUGa -3'
miRNA:   3'- -GCAgUUUGUacaGGCuuAGUGGCGCg -5'
1697 3' -49.4 NC_001347.2 + 192733 0.72 0.974878
Target:  5'- cCGUCAAcaGCGUG-CCuu-UUGCCGCGCg -3'
miRNA:   3'- -GCAGUU--UGUACaGGcuuAGUGGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 193070 0.68 0.997759
Target:  5'- uCGUCGcggacugccGGCAUGUCCG----GCCGuCGCa -3'
miRNA:   3'- -GCAGU---------UUGUACAGGCuuagUGGC-GCG- -5'
1697 3' -49.4 NC_001347.2 + 195821 0.71 0.988694
Target:  5'- aGUCGGACcucgcUGUCUGG---GCCGCGCu -3'
miRNA:   3'- gCAGUUUGu----ACAGGCUuagUGGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 196178 0.7 0.994238
Target:  5'- cCGUCAA----GUaCCGGAcgCACCGCGCc -3'
miRNA:   3'- -GCAGUUuguaCA-GGCUUa-GUGGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 197795 0.66 0.999752
Target:  5'- aCGUCAc-CGUGUgacgCCGGgcaagcaagaaAUCACCGaCGCg -3'
miRNA:   3'- -GCAGUuuGUACA----GGCU-----------UAGUGGC-GCG- -5'
1697 3' -49.4 NC_001347.2 + 198567 0.68 0.998687
Target:  5'- aGUCAAACAacgCCGGcgUGCuCGCGUa -3'
miRNA:   3'- gCAGUUUGUacaGGCUuaGUG-GCGCG- -5'
1697 3' -49.4 NC_001347.2 + 207328 0.67 0.999173
Target:  5'- cCGUCuuGCAagauguuaguggugaUGUCgcugaaauugCGGAUCACCGUGUc -3'
miRNA:   3'- -GCAGuuUGU---------------ACAG----------GCUUAGUGGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 210870 0.67 0.999402
Target:  5'- aCGUCAAagGCcUGUCC-----GCCGCGCc -3'
miRNA:   3'- -GCAGUU--UGuACAGGcuuagUGGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 222407 0.67 0.999402
Target:  5'- aGUCGGcCGUGga-GAggcGUCGCCGCGUc -3'
miRNA:   3'- gCAGUUuGUACaggCU---UAGUGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.