miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1697 3' -49.4 NC_001347.2 + 153789 0.68 0.998913
Target:  5'- cCGcUCAGGCcgugguaGUCCGAGUCGCCuccGgGCg -3'
miRNA:   3'- -GC-AGUUUGua-----CAGGCUUAGUGG---CgCG- -5'
1697 3' -49.4 NC_001347.2 + 152709 0.67 0.999402
Target:  5'- aUGUUGAGCGUGacgCUGuAGUCuuCGCGCg -3'
miRNA:   3'- -GCAGUUUGUACa--GGC-UUAGugGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 146860 0.75 0.91697
Target:  5'- aGU-GAACAUGUCCGAcu--CCGCGCu -3'
miRNA:   3'- gCAgUUUGUACAGGCUuaguGGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 139630 0.71 0.983771
Target:  5'- aCGUC-AugGUGUCa--AUCGCUGCGCu -3'
miRNA:   3'- -GCAGuUugUACAGgcuUAGUGGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 139351 0.69 0.99572
Target:  5'- uGUCAGGC--GUCCGAGaCgACUGUGCa -3'
miRNA:   3'- gCAGUUUGuaCAGGCUUaG-UGGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 138097 0.66 0.999688
Target:  5'- gGUCuucgaguACGUGUCgGGGgucugUGCCGCGUa -3'
miRNA:   3'- gCAGuu-----UGUACAGgCUUa----GUGGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 130740 0.67 0.999402
Target:  5'- aGUCccccGGCgccccucgccgGUGUCCgGAGUCACCGUGg -3'
miRNA:   3'- gCAGu---UUG-----------UACAGG-CUUAGUGGCGCg -5'
1697 3' -49.4 NC_001347.2 + 129712 0.66 0.999835
Target:  5'- uCGUC-AACA-GUUCGAuuggcuggaggaacGUUGCUGCGCa -3'
miRNA:   3'- -GCAGuUUGUaCAGGCU--------------UAGUGGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 128866 0.66 0.999688
Target:  5'- cCGUCGcGCAcggcgcuucUGUCUGGAUUAcgaacCCGUGCc -3'
miRNA:   3'- -GCAGUuUGU---------ACAGGCUUAGU-----GGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 126487 0.72 0.974878
Target:  5'- cCGUCAGcGCGUGUCCGcuuUCGuggcguacgccgUCGCGCg -3'
miRNA:   3'- -GCAGUU-UGUACAGGCuu-AGU------------GGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 124195 0.76 0.877964
Target:  5'- cCGUCAGACGcuggugaucgGUCCGggUCACaCGCa- -3'
miRNA:   3'- -GCAGUUUGUa---------CAGGCuuAGUG-GCGcg -5'
1697 3' -49.4 NC_001347.2 + 111081 0.67 0.99961
Target:  5'- --cCGAuCGUGUgCGAAUCACCcucCGCg -3'
miRNA:   3'- gcaGUUuGUACAgGCUUAGUGGc--GCG- -5'
1697 3' -49.4 NC_001347.2 + 104411 0.68 0.998423
Target:  5'- aCGUUcggcAGCAUGUCCGAGcgCaauGCCGcCGCc -3'
miRNA:   3'- -GCAGu---UUGUACAGGCUUa-G---UGGC-GCG- -5'
1697 3' -49.4 NC_001347.2 + 99524 0.68 0.998913
Target:  5'- aCGUCGAACGcgaucUGcggCCGggUCGCgCG-GCa -3'
miRNA:   3'- -GCAGUUUGU-----ACa--GGCuuAGUG-GCgCG- -5'
1697 3' -49.4 NC_001347.2 + 98025 0.68 0.998115
Target:  5'- gCGUCGGACGcuccUCCGGAcgaaaCGCCGCGg -3'
miRNA:   3'- -GCAGUUUGUac--AGGCUUa----GUGGCGCg -5'
1697 3' -49.4 NC_001347.2 + 97374 1.14 0.010485
Target:  5'- cCGUCAAACAUGUCCGAAUCACCGCGCg -3'
miRNA:   3'- -GCAGUUUGUACAGGCUUAGUGGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 95112 0.67 0.999266
Target:  5'- gCGUCGcACAUgacGUCUGAG-CGCCGCu- -3'
miRNA:   3'- -GCAGUuUGUA---CAGGCUUaGUGGCGcg -5'
1697 3' -49.4 NC_001347.2 + 93766 0.67 0.999104
Target:  5'- gCGUgAuAgAUGaauUCCucGUCGCCGCGCa -3'
miRNA:   3'- -GCAgUuUgUAC---AGGcuUAGUGGCGCG- -5'
1697 3' -49.4 NC_001347.2 + 88223 0.68 0.998687
Target:  5'- cCGcUCAcGC-UGUCCGAgggGUCGCUGcCGCc -3'
miRNA:   3'- -GC-AGUuUGuACAGGCU---UAGUGGC-GCG- -5'
1697 3' -49.4 NC_001347.2 + 86188 0.68 0.997759
Target:  5'- aGcCAcACGUagucGUCCGAGcCGCCGUGCc -3'
miRNA:   3'- gCaGUuUGUA----CAGGCUUaGUGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.