Results 41 - 54 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1697 | 3' | -49.4 | NC_001347.2 | + | 85531 | 0.69 | 0.997347 |
Target: 5'- gCGcUUGAGCGUGgccCUGAAgagCGCCGCGUc -3' miRNA: 3'- -GC-AGUUUGUACa--GGCUUa--GUGGCGCG- -5' |
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1697 | 3' | -49.4 | NC_001347.2 | + | 68475 | 0.69 | 0.99572 |
Target: 5'- gCGUCuuggcGCcgG-CCGAAgccUCGCCGUGCu -3' miRNA: 3'- -GCAGuu---UGuaCaGGCUU---AGUGGCGCG- -5' |
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1697 | 3' | -49.4 | NC_001347.2 | + | 65543 | 0.68 | 0.998687 |
Target: 5'- gCGUC-AACcUG-CCGGcUCACuCGCGCu -3' miRNA: 3'- -GCAGuUUGuACaGGCUuAGUG-GCGCG- -5' |
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1697 | 3' | -49.4 | NC_001347.2 | + | 63573 | 0.66 | 0.999804 |
Target: 5'- gCGUUcuggacuGCAUccGUCCGGuggUGCCGCGCu -3' miRNA: 3'- -GCAGuu-----UGUA--CAGGCUua-GUGGCGCG- -5' |
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1697 | 3' | -49.4 | NC_001347.2 | + | 57073 | 0.69 | 0.996874 |
Target: 5'- aGUCAAACAgauuaagGUUCGAGUggaCAUgGUGCg -3' miRNA: 3'- gCAGUUUGUa------CAGGCUUA---GUGgCGCG- -5' |
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1697 | 3' | -49.4 | NC_001347.2 | + | 52494 | 0.66 | 0.999846 |
Target: 5'- gGUguGGC-UGUCUGuuuGUCugUGCGCc -3' miRNA: 3'- gCAguUUGuACAGGCu--UAGugGCGCG- -5' |
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1697 | 3' | -49.4 | NC_001347.2 | + | 35289 | 0.73 | 0.955572 |
Target: 5'- gGUC-AGCGUGUCUGA--UACCGgGCg -3' miRNA: 3'- gCAGuUUGUACAGGCUuaGUGGCgCG- -5' |
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1697 | 3' | -49.4 | NC_001347.2 | + | 31303 | 0.75 | 0.911059 |
Target: 5'- aCGUCccugg-GUCCGAGgucggCACCGCGCc -3' miRNA: 3'- -GCAGuuuguaCAGGCUUa----GUGGCGCG- -5' |
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1697 | 3' | -49.4 | NC_001347.2 | + | 30826 | 0.69 | 0.997347 |
Target: 5'- gGUUuggGGACGUGUCCGGc-UACCGUGUc -3' miRNA: 3'- gCAG---UUUGUACAGGCUuaGUGGCGCG- -5' |
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1697 | 3' | -49.4 | NC_001347.2 | + | 26265 | 0.72 | 0.974878 |
Target: 5'- uGUCAuGCGUGUCuaCGGAUUGCUGaCGCu -3' miRNA: 3'- gCAGUuUGUACAG--GCUUAGUGGC-GCG- -5' |
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1697 | 3' | -49.4 | NC_001347.2 | + | 24377 | 0.69 | 0.996874 |
Target: 5'- -uUCGAGguUgucGUCCGAAUCGCCG-GCu -3' miRNA: 3'- gcAGUUUguA---CAGGCUUAGUGGCgCG- -5' |
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1697 | 3' | -49.4 | NC_001347.2 | + | 20352 | 0.74 | 0.941972 |
Target: 5'- uCGUCuccuaaucGACGUGUCCGcggcgugaccacGUCACCGUGCc -3' miRNA: 3'- -GCAGu-------UUGUACAGGCu-----------UAGUGGCGCG- -5' |
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1697 | 3' | -49.4 | NC_001347.2 | + | 13523 | 0.66 | 0.999804 |
Target: 5'- cCGcCGGGCG-GcCCGGGcCGCCGUGCu -3' miRNA: 3'- -GCaGUUUGUaCaGGCUUaGUGGCGCG- -5' |
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1697 | 3' | -49.4 | NC_001347.2 | + | 855 | 0.77 | 0.85067 |
Target: 5'- aCGUCGGAgGUGUCCGGcgcccauggcccagcGcaacggcaugUCGCCGCGCc -3' miRNA: 3'- -GCAGUUUgUACAGGCU---------------U----------AGUGGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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